Transcript Information: R_Transcript_25780.p1


Annotated TAIR IDAT3G49601.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:18387504-18389279 | Reverse length=591
E-Value5.4E-84
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 142.238635777126
Replicate 242.731164163823
Replicate 342.07242508238
Condition 2: 8 Hour
Replicate 174.380428947787
Replicate 279.190107927515
Replicate 368.387789259473
Condition 3: 24 Hour
Replicate 151.135919867738
Replicate 245.357360306376
Replicate 345.755201757534


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_25780.p1 GENE.R_Transcript_25780~~R_Transcript_25780.p1 ORF type:complete len:796 (+),score=298.21 R_Transcript_25780:286-2673(+)
ATGTACAACGGAATAGGGTTACAGACACCGAGGGGGTCAGGGACCAATGGATATGTGCAGACGAACAGGTTCCTTGTTAGGGCAAAGACGTCGAAGGTCATAGTTGATGGGAACAAGGGGTATGGTCCTGATCAGGGTACGGCTGGTATCAGCAAAAAGCCCAACAAGGATATACTGGAGCATGATCGGAAACGGCAGATTGAGCTTAAGCTGGTCATCCTTGAGGACAAACTCGTCGATCAGGGTTACACTGATGCTGAGATTGCTGAGAAGCTCAACGAGGCTCGTAGGAATCTTGAAGCTGCTGCTTCTGGTGAGGATGGTGCTGGTGCTGTTGTCTCGGATAATAAGGTATCAGATACACAAACCCACCAAATTGCAGCAAGGAAGGAGAAACAAATGGAGAAATTAAGAGCTGCTCTTGGGATTACTTCTCCCGATGTTGATACAGAAAAGCAGGACAACCTGGGTGAGTCAGGTATCGATATTGATGATGATGAGAAGCAGAGGAGGAATAGGGAAGGTTCAGATGACAGCAGTGAATGTGAAGAAGGTGAAATTTTGCATGGTGATGAGGACATAAAGAGCGAGAAGTATTCTCAAGATGATGATAAGAGCAAAAAACAAGGGGGAATGAGGAGAGAGCAAAATAGAAGGAGAAAACATGGCTATGAGTCTCTTGATTCAGAAAGTGACAAGGAGCAGACAAGTGAATCAGAAACTGATTCAGAGCAAGAAAGAAAGAGAAAGCACAACTCTACTAAGATGCCCAAGAAAATTGTTTCTGATGACAGTGATGATTCAGGTTCTGATAGTGATGAACCTAATAGAGGTCGTCGCAAGGATGCTGGGAGATATACCAGAGGTCACAAGAGGCATGATACAAGTAGTGAATCTGACCAAAGCAGCAGGTCTCCAGACTATAGAACCATGAAATCAAAACATAAGTTGGGCAAAGGCAGATATGATTCTGAGGACGAGCATGATGTTGGTGCTTCCAAGAGAAAAACTACGGCTAATAAAGACGGAGAGTTTGCTGGAAGCCACAAGGACAAGAGATCTGCTTTGGATAGGGGTGATTATGGTAGAAGGCATGAGGACAGGTACAATGAAAGTTCTGATAGGTTATACCATGATAGTGAATCTGATTCTGATATGAGGGCAAAGCCTGAAAAGCGAGCACCAGAGAGAAGTCGAAAAAGTAGGAGGCATGATACAGATGAAGATGATTCTGATTCAGGTGAAGATATCAAGGAACAAAGACGTAGGAGAGTCAAACGTGACTCGGAAGACAACTCCGACATTGAAACAATTAGAAAGGCTACTAATGATCAAAAAGGTAAAGTGGAGCTAAAATTGAGAGGAAGTAATAAGGATGCTGGTAATTATGTCAAAAAAAACCCTCACCAAGATGAGGATGATAAGAGGCGGCATAATAGAATTGAAGATGTTGGATTTAGAAAACGTGATAGGAGGGAGGAAGATGAGTATGTTACAAAGAGGTCAGAAAACAGAGATGACAACTTGCAACGAGGTAGAAAGAAAGAGAGGGAGGAGCAAAATGACCAACAAAGGAGAAGGCGAGATGAGGAAGATTATCATGAGAGGAGAAAGCTGGAGAAGGAGGAAGATGATAATGAGAGGAGGGGGGTTGTTAGGAAGGAGGATGATGACCATGACAGGAGAAGGCGGGAAAGGAAGGAGGAAGGTGTTCATGAGAGGAGAAAGCGGGATGGAAAAGAGGAAGGCGATTATGAAAGGAGAAAGCGCAAAATGGAGGAAGAAGAACATCAAAGGAGAAAGCTTGAAAAGGAGGAGGACAATGAGCGAAGCAGAAAGGTGGAAGGAAGGGAAGAAGATGCACATAAAAGCAGAAAACGTGAAAGGCTGCAGGAAAGTGAGCATGGAAATAGAAGACATGATGATAGGGATGGTGATGAACAGAAAGACAGAAAGCAGGAGAGGAGGGAGGAAGACAGGAAGCGGAGTAGGAGAGATGAGGATGAGCAGGGAGCCCAAAATAGGGAGAGGAGAGATGAAGATGAGAAGAGAGGCAGAAAATACGAGAGAAGGGAGGAGGATGAGCTGCGAAGCAGGAAGTGGGATCGAGGGGAAGAAGGTGACCATGTTGTCAGAAAGCGGGAGAGAAGGGAGGAGGAAGAGCATGTAAACCATAATCCGGAGAGGAGGGGACAAGAGCAGAGTGGTAGAGATGAGGAAAGGGAGCAAGATGATCTTGAACACAAAATTCGGGAGAAAAGGAAGGAGGGAGATCGTGGAGGCAGAAGGCATCAGAAGGACAAAGATTCTTCCAGGAGGCCCAGGTCTGATGATGTGCGAGGAAGGTATGAGACAGACAGACGTGATGATGAACGAAGGAGACGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_25780.p1 GENE.R_Transcript_25780~~R_Transcript_25780.p1 ORF type:complete len:796 (+),score=298.21 R_Transcript_25780:286-2673(+)
MYNGIGLQTPRGSGTNGYVQTNRFLVRAKTSKVIVDGNKGYGPDQGTAGISKKPNKDILEHDRKRQIELKLVILEDKLVDQGYTDAEIAEKLNEARRNLEAAASGEDGAGAVVSDNKVSDTQTHQIAARKEKQMEKLRAALGITSPDVDTEKQDNLGESGIDIDDDEKQRRNREGSDDSSECEEGEILHGDEDIKSEKYSQDDDKSKKQGGMRREQNRRRKHGYESLDSESDKEQTSESETDSEQERKRKHNSTKMPKKIVSDDSDDSGSDSDEPNRGRRKDAGRYTRGHKRHDTSSESDQSSRSPDYRTMKSKHKLGKGRYDSEDEHDVGASKRKTTANKDGEFAGSHKDKRSALDRGDYGRRHEDRYNESSDRLYHDSESDSDMRAKPEKRAPERSRKSRRHDTDEDDSDSGEDIKEQRRRRVKRDSEDNSDIETIRKATNDQKGKVELKLRGSNKDAGNYVKKNPHQDEDDKRRHNRIEDVGFRKRDRREEDEYVTKRSENRDDNLQRGRKKEREEQNDQQRRRRDEEDYHERRKLEKEEDDNERRGVVRKEDDDHDRRRRERKEEGVHERRKRDGKEEGDYERRKRKMEEEEHQRRKLEKEEDNERSRKVEGREEDAHKSRKRERLQESEHGNRRHDDRDGDEQKDRKQERREEDRKRSRRDEDEQGAQNRERRDEDEKRGRKYERREEDELRSRKWDRGEEGDHVVRKRERREEEEHVNHNPERRGQEQSGRDEEREQDDLEHKIREKRKEGDRGGRRHQKDKDSSRRPRSDDVRGRYETDRRDDERRRR*

Click here to download the sequence:
Link to NCBI Protein BLAST