Transcript Information: R_Transcript_257908.p1


Annotated TAIR IDAT1G12775.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:4353906-4355840 | Forward length=644
E-Value9E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.24176107224793
Replicate 20.2780966942556
Replicate 30.30340049796228
Condition 2: 8 Hour
Replicate 10.64863218403298
Replicate 20.44425593061958
Replicate 30.60104670928434
Condition 3: 24 Hour
Replicate 10.9122307507697
Replicate 20.14606131715614
Replicate 30.43485506000458


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_257908.p1 GENE.R_Transcript_257908~~R_Transcript_257908.p1 ORF type:5prime_partial len:151 (+),score=24.28,PPR_2|PF13041.2|4.8e-07,PPR_2|PF13041.2|2.4e-17,PPR_2|PF13041.2|1.5e-18,PPR_2|PF13041.2|2.6e-13,PPR_2|PF13041.2|0.16,PPR_1|PF12854.3|7e-15,PPR_1|PF12854.3|6.1e-13,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|1e-05,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|7.8e-09,PPR|PF01535.16|2.3e-08,PPR|PF01535.16|0.002,PPR|PF01535.16|0.0077,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|2.6e-05,PPR_3|PF13812.2|3e-08,PPR_3|PF13812.2|0.053,PPR_3|PF13812.2|1.1 R_Transcript_257908:3-455(+)
CAACTAATGGATTTCATGGTGGAAAAGGGTTGCCAGCCTAACCTTGTGACTTTCAACTCCTTGATCTATGGATATTGCAAGGCTAAAAACATTGATGTTGCTTTCAACTTGTTCCACGAAATGCCTGTTGAGGGCCTCTCACTTAATATTCATACGTACAGCACTCTCATTGATGGCTCGTGCAAGAGCAATAGACTCAAATCAGCTTTCCAACTTTTTGAGGAAATGAAAGCTCATGGACTACATCCAGATGTTGTCACATACGCTTCCTTGGTTGACGGTTTGTGTAAAAATGCACGAATTGAAGAGGATACGGAACTGTTTAGGGGCATGAAGAACAATGGAGTGGTTCCTGATCAATTCATTTATGTTATTTTTCTTAATGCTCTGTGCGAAGCTGGTAGACTTACAGAAGCAGAGGACATTTTTTCTTTCCTTTTAACCAAGGGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_257908.p1 GENE.R_Transcript_257908~~R_Transcript_257908.p1 ORF type:5prime_partial len:151 (+),score=24.28,PPR_2|PF13041.2|4.8e-07,PPR_2|PF13041.2|2.4e-17,PPR_2|PF13041.2|1.5e-18,PPR_2|PF13041.2|2.6e-13,PPR_2|PF13041.2|0.16,PPR_1|PF12854.3|7e-15,PPR_1|PF12854.3|6.1e-13,PPR_1|PF12854.3|3.1e-10,PPR_1|PF12854.3|1e-05,PPR|PF01535.16|1.2e+03,PPR|PF01535.16|7.8e-09,PPR|PF01535.16|2.3e-08,PPR|PF01535.16|0.002,PPR|PF01535.16|0.0077,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|2.6e-05,PPR_3|PF13812.2|3e-08,PPR_3|PF13812.2|0.053,PPR_3|PF13812.2|1.1 R_Transcript_257908:3-455(+)
QLMDFMVEKGCQPNLVTFNSLIYGYCKAKNIDVAFNLFHEMPVEGLSLNIHTYSTLIDGSCKSNRLKSAFQLFEEMKAHGLHPDVVTYASLVDGLCKNARIEEDTELFRGMKNNGVVPDQFIYVIFLNALCEAGRLTEAEDIFSFLLTKG*

Click here to download the sequence:
Link to NCBI Protein BLAST