Transcript Information: R_Transcript_259175.p1


Annotated TAIR IDAT5G41560.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16621427-16622619 | Reverse length=101
E-Value4.1E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 129.315361533336
Replicate 239.023427036352
Replicate 341.185851435506
Condition 2: 8 Hour
Replicate 128.443176453871
Replicate 231.395581574998
Replicate 328.235838742824
Condition 3: 24 Hour
Replicate 127.595748081786
Replicate 222.500819676245
Replicate 320.340089203985


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_259175.p1 GENE.R_Transcript_259175~~R_Transcript_259175.p1 ORF type:complete len:99 (+),score=17.20,DDA1|PF10172.5|6.6e-26 R_Transcript_259175:89-385(+)
ATGGGTTCTTTGTTTGGTGACTGGCCTTCCCATGATCTTCACAACTTCAGCCAACTTCGACCCTCTGATCCTTCAAATCCCTCTAGATTAACTCCTGCAACCTACCGTCCTACTCACAGTCGCACTCATCCCCCACCTGATCAAGTCATTTGTACTGAAAGTAAAAACATTCTGATCAGACACTTCTATAATCATGCAGAGGAGAAGCTGCGATCCAAGAGAGCTGCTTCGGAACATATTGCCCCCGAGAATGGAGCCAAGCATCTGAGAGCATCTACTTCAGGGGCTTCTGTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_259175.p1 GENE.R_Transcript_259175~~R_Transcript_259175.p1 ORF type:complete len:99 (+),score=17.20,DDA1|PF10172.5|6.6e-26 R_Transcript_259175:89-385(+)
MGSLFGDWPSHDLHNFSQLRPSDPSNPSRLTPATYRPTHSRTHPPPDQVICTESKNILIRHFYNHAEEKLRSKRAASEHIAPENGAKHLRASTSGASV*

Click here to download the sequence:
Link to NCBI Protein BLAST