Transcript Information: R_Transcript_259200.p1


Annotated TAIR IDAT4G38440.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:17989115-17994549 | Forward length=1465
E-Value2E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.15872139960625
Replicate 20.18257652535911
Replicate 30
Condition 2: 8 Hour
Replicate 10.42584112951731
Replicate 20.19444245079292
Replicate 30
Condition 3: 24 Hour
Replicate 10.59889931898359
Replicate 20.19178485991806
Replicate 30.57098360052776


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_259200.p1 GENE.R_Transcript_259200~~R_Transcript_259200.p1 ORF type:internal len:115 (+),score=33.95 R_Transcript_259200:3-344(+)
GCAGAGATAAGAAATAGGATAGATCCCGAACTGCTTAAGATTTTGAAGAAACGAGGGCAACAGAAATTGGAGAAGCAGAGAAACTCCACCTGCACTTCCAGTGCTGGTGATGTGCTAGTTTCGGGTGATACAAAAGGTGGAAAACATATAACCAAAGGTGAACTTCAATCTTCCATTCCAGAAACTAATCTCTCTCCATCAGATAGAACTCCAGCCCCGAAAAAGACAGAGAAAAGGCCAGATTATGGTGATGTTCAGAATTCGACATCAAAAGGTGGCAGCTTGTGGGATGATTGGAGTAAACGGGTTGAGTCTGTGAGGAATCTGAGGTTTTCATTGGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_259200.p1 GENE.R_Transcript_259200~~R_Transcript_259200.p1 ORF type:internal len:115 (+),score=33.95 R_Transcript_259200:3-344(+)
AEIRNRIDPELLKILKKRGQQKLEKQRNSTCTSSAGDVLVSGDTKGGKHITKGELQSSIPETNLSPSDRTPAPKKTEKRPDYGDVQNSTSKGGSLWDDWSKRVESVRNLRFSLE

Click here to download the sequence:
Link to NCBI Protein BLAST