Transcript Information: R_Transcript_25931.p1


Annotated TAIR IDATMG00860.1
Annotated Gene NameDNA/RNA polymerases superfamily protein
Annotated Gene Symbol(s)ORF158
Annotation TypeHomolog
Chromosome PositionchrM:235916-236392 | Forward length=158
E-Value2E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.26242276132982
Replicate 20.43602540800619
Replicate 30.67695630276169
Condition 2: 8 Hour
Replicate 10.76273860458671
Replicate 20.3929228438547
Replicate 30.37695038029558
Condition 3: 24 Hour
Replicate 10.55010720194179
Replicate 20.40516849399623
Replicate 30.50698357501599


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_25931.p1 GENE.R_Transcript_25931~~R_Transcript_25931.p1 ORF type:complete len:1252 (-),score=145.65,RVT_1|PF00078.23|1.5e-24,RVT_3|PF13456.2|2.4e-20,Retrotrans_gag|PF03732.13|3.8e-15,Retrotrans_gag|PF03732.13|4.6e+03 R_Transcript_25931:3076-6831(-)
ATGTACCTAAGGATGGCTGGGGACGAGATATGGTGCAGATACTTCCCGTCAACCCTAAAGGGGATCGCACAGAAGTGGTTTAACCATCTACCCCGAGGTAGCATCCACAACTTCTCCGAGCTCTCTGAGAAGTTCTGCAGCCACTTCGTGGCCAGTAAGCAGGAGAGAAAGACTAGTATCCAGCTGCAACGGATAGTCCAGGGGGAAGGAGAAACGTTGAAAAGCTACGTAAAGCGCTTCAACAACGAAGCTATCCAAATACCCAGCCTCTCTGATGAAGTCGCCTTCGCGGCCTTCATGAGTGGCCTTAGAAACAACGGGTTCAAGTTCACGCTCTGTCGAAAGCAAGTGAACACCTACTCGGAGGCTCTATCTCGGGCTGAGTCCTTTATACAAGCTACCGAGATCTGCTCTCCCGAGGAGGGAAGGAAGAGGAGGAACAAGGAGGCACTTGTGATCCAGGAACCCAGGCCCCAAAAAGCCCGGGTTCAGAAAAAGCCTCCCCCGCCAGTGCCCTTCACCGATGAGGACTCACCTTTCAAACTGGACTGTCGGAAGATGTGGCAAGAGCTAAAGGAACAACGCATCTTACCAACACCACCGCCCATCACCACCCCGGATCATTTCCGGAACAAAAAGAAGTTTTGCGAGTACCATAAGGATCACGGCCATATGACTCAGGACTACCAACAGCTAAAGCACGATTTGTTCGAGTTAGCCAAGGCCGGAAAGCTGACCAAGTACCTCCGGGAAGGGTACAAATTGGCCATACCCAAGCTTGCTCGGGGTGACGGGGTAGTGGACTCACACTCGGTCGACGGGGGAGAGACCCCTATGATCGGGGTGATCACCGGTGGGTCCGCATCTGGGGGCCCAACATTGAGGGGCTGCAAGGACTATGTCCGGAGTCTCTCCGCTACTCGTCAGGGAAGCTCGGCAGCGCCCCCTGACATGTTGTTCTGTGCAGCGGACCAGAGGGGGGTGGTCGGTCCACATGATGACCCCCTGGTGGTTGAGATAAAGATCGCTGATAAGATCGTGCCCCGCATTCTGGTCGACACGGGGAGCTCGGCCGACATCATTCATCTAAGCTGTCTGGACAAGCTGAGCTTCTGCAAGGAGCAGTTAATCCCGGTAAGTAATGCCGTGTACGGGTTCGGTGGAAATGCTGTCTACCCGGTGGGAACTGTGACTCTGCCTATTCGGGTGAATAGAGGTCCAGTAGCCAGACACCATACGGTCGAGTTCTTGGTGATTGACACTCCTTTGGCGTATAACGTCATCATAGGTCGGCCAACTTTGAACGCCATCAAAGCCGTCGTAGCAACTCACATGCTGCTCATGCAGTACGAGTCAAACAACGGGAAGGCGGGCAAGTTGTATGGCGACCAGCGAACTAGCAGGGAATGTTACCTTGCTGATTTGAAGGGATGGACGGCCAAGCCAGAGCTCGGTTCTAAGAGAAAAATAGATGAGCTCGGCCCCCAAATCATGATGATGGAACACCTGGATGCTCGGCTTGACAACGAGCCCCATCCAGAGCCGATGGACGAAACCGAGGAGGTCCAGCTTGACCGTGCTCGTCCCGACAGGACGGTCATTATGGGGAGAATGGAAGCATCTTTGGCTGAGCTCACCAAGCAGGTGATTTGTGAACACGCTGATGTGTTTGCCCACTCAGTCGAGGATATGCCAGGCATTGACCCCTCGGTGGCCGAGCACAGACTCAACATCAAGGCCAATGTCTCCCCAGCCCAGCAGAAGAAAAGGAACATGGGACCGGAAAGATCCCAAGCAGCAAATGAAGAAGTAGACAAGTTGTTGGAGGCCGGTTTCATCAGGGAGTGTCAATACCCGGGGTGGTTGTCCAACGTGGTCATGGTGCGAAAGGCAAACGGGTCGTGGAAGATGTGTGTAGACTTCACCGACCTAAACAAGGCCTGTCCGAAGGACCATCACCCCCTACCCCGGATAGACAGGCTGGTGGACTCGACAGCAAGCCATGCCATGCTCAGCTTCCTCGACGCCTTCTCGGGGTATCATCAGATACCTCTCCACCGGGAGGACCAGGAAAACACTGCTTTCATTGTTGACCGAGGAGTCTACTGCTACCAAGTTATGCCATTCGGATTAAAGAATGCGGGTGCTACATACCAGAGGATGGTTGATAGGATGTTTGAAGGACAAATCGGACGCAACATGGAGGTGTACGTCGATAACATGATTGTTAAGAGCAAAACAGCGGAGCAGCACCCAGCCGATTTGAGAGAGACCTTTCAGTGTCTAAGGAGGCACAGGATGAAACTCAATCCCAAAAAATGCACCTTTGGCGTGTCCTCGGGCAAGTTCCTTGGTTTCCTGATCAGTCAGAGGGGGATTGATGTCAACCCGGACAAAGTGCAGGCCATAGCAGACATGAAACCCCCGAGGTCCATAAAGGAGGTGCAGAAGCTCGCCGGGTGCGTGGCGGCCTTGAGGCGGTTTATGTCCAAGTCGGCCGAAAAGTGCATGCCATTCTTCGATGTCTTAAAGAAGAAGGCTAAGTTTGAGTGGACTCAGGCTGCCCAGCTCTCCTTTGAGAAATTGAAGGAGCATTTGAGATCCCTGCCAAGGATGGTGAGCCCTGAGGTCGGGGAAACCCTTTACCTCTACCTCTCGGTATCTGAAGTGGCTGTGAGCTCGGTCTTGGTTGCTGAAAGGGATCAAGAGCAGAAACCGGTTTACTTCATCAGTCACGCCCTATGCGGTCCCCAGTTGCGCTACTCGGATTTGGAAAAGTTCGCCCTAGCTCTGCTGCTTACACACCGCAAGCAGTACCCCTACTTCCAATCAAACCAAGTAGTGGTCCTCACAAATCAACCATTGAAGAAGGTGATGGAGAGACTGGATTGCGCCGGGCGCATGCAAGTATGGGCAGCGGAGATGTCAGGCCCGGGGTGTCCCCAATATGAACCTCGGCGGGCCATCAAGGCTCAGCCCCTGGCTGATTTCATAGTTGAGTGTACTCGGGATGAAGAATACCTGGATTGCCCAATGACGGAGTGGTGGCGCCTCTTTGTGGATGGCTCTGCTACAATGAGAGGCAATGGAGCAGGGGTGATCATCATTGATCCGAGTGGCTACAAGTCAGAGTATGCGGTCAGGATCAACTTCAAAGCCTCCAACAACGAGACCGAGTATGAGGCACTCTTGAGTGGGCTCGGGATGGCAAGCTCGGCCAAAGCTCAAAAGGTAGATGTCTTCACTGACTCATTGCTTGTAGCGGGGCAAATATCTGGGGAGTACTCGGCCAAGGAACCGCGTATGCAGCTCTACCTCGAGAAAGTGAAAGCAGTCTTGTCTACCTTCCAGCAGTACCGAGTAACCCACATAGCTCGGTCAGAGAATCAAGAAGCTGATGCCTTGGCTAGGCTAGCCAGTTCTTCTCTGAGCGACAAGCCAAGGACGGTGTACTGGGAAGTCCTCGGGAAGCGCAGCATCGAGGTCGGGGAAAATCTGTGGATTGACAGGTCGGAGACCTGGATGGACCCCATCAAGGATACCTCCAAAGGGGCACCCTGCCTGTGGATCCTAAGGAAGCAGCCCGGGTACAAACGAAGTCCAAATGGTTCGCACTGCATGAAGGGGTCCTATACAAAAAGTCATTCACCCAGCCCTGGCTCAAGTGTCTTGGCCCAGACCGGGGAAGAGCGGTGTTGGAAGAGCTGCATCAAGGAATATGCTCGGCCCATATGGGGGGCAGGGCTTTGTCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_25931.p1 GENE.R_Transcript_25931~~R_Transcript_25931.p1 ORF type:complete len:1252 (-),score=145.65,RVT_1|PF00078.23|1.5e-24,RVT_3|PF13456.2|2.4e-20,Retrotrans_gag|PF03732.13|3.8e-15,Retrotrans_gag|PF03732.13|4.6e+03 R_Transcript_25931:3076-6831(-)
MYLRMAGDEIWCRYFPSTLKGIAQKWFNHLPRGSIHNFSELSEKFCSHFVASKQERKTSIQLQRIVQGEGETLKSYVKRFNNEAIQIPSLSDEVAFAAFMSGLRNNGFKFTLCRKQVNTYSEALSRAESFIQATEICSPEEGRKRRNKEALVIQEPRPQKARVQKKPPPPVPFTDEDSPFKLDCRKMWQELKEQRILPTPPPITTPDHFRNKKKFCEYHKDHGHMTQDYQQLKHDLFELAKAGKLTKYLREGYKLAIPKLARGDGVVDSHSVDGGETPMIGVITGGSASGGPTLRGCKDYVRSLSATRQGSSAAPPDMLFCAADQRGVVGPHDDPLVVEIKIADKIVPRILVDTGSSADIIHLSCLDKLSFCKEQLIPVSNAVYGFGGNAVYPVGTVTLPIRVNRGPVARHHTVEFLVIDTPLAYNVIIGRPTLNAIKAVVATHMLLMQYESNNGKAGKLYGDQRTSRECYLADLKGWTAKPELGSKRKIDELGPQIMMMEHLDARLDNEPHPEPMDETEEVQLDRARPDRTVIMGRMEASLAELTKQVICEHADVFAHSVEDMPGIDPSVAEHRLNIKANVSPAQQKKRNMGPERSQAANEEVDKLLEAGFIRECQYPGWLSNVVMVRKANGSWKMCVDFTDLNKACPKDHHPLPRIDRLVDSTASHAMLSFLDAFSGYHQIPLHREDQENTAFIVDRGVYCYQVMPFGLKNAGATYQRMVDRMFEGQIGRNMEVYVDNMIVKSKTAEQHPADLRETFQCLRRHRMKLNPKKCTFGVSSGKFLGFLISQRGIDVNPDKVQAIADMKPPRSIKEVQKLAGCVAALRRFMSKSAEKCMPFFDVLKKKAKFEWTQAAQLSFEKLKEHLRSLPRMVSPEVGETLYLYLSVSEVAVSSVLVAERDQEQKPVYFISHALCGPQLRYSDLEKFALALLLTHRKQYPYFQSNQVVVLTNQPLKKVMERLDCAGRMQVWAAEMSGPGCPQYEPRRAIKAQPLADFIVECTRDEEYLDCPMTEWWRLFVDGSATMRGNGAGVIIIDPSGYKSEYAVRINFKASNNETEYEALLSGLGMASSAKAQKVDVFTDSLLVAGQISGEYSAKEPRMQLYLEKVKAVLSTFQQYRVTHIARSENQEADALARLASSSLSDKPRTVYWEVLGKRSIEVGENLWIDRSETWMDPIKDTSKGAPCLWILRKQPGYKRSPNGSHCMKGSYTKSHSPSPGSSVLAQTGEERCWKSCIKEYARPIWGAGLCP*

Click here to download the sequence:
Link to NCBI Protein BLAST