Transcript Information: R_Transcript_261000.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value1.2E-91
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7042076567059
Replicate 21.5476388513242
Replicate 31.6884573166697
Condition 2: 8 Hour
Replicate 11.5040457584303
Replicate 22.5272741147286
Replicate 32.9435044249276
Condition 3: 24 Hour
Replicate 11.8050364405074
Replicate 21.950833710223
Replicate 31.7209006142032


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_261000.p1 GENE.R_Transcript_261000~~R_Transcript_261000.p1 ORF type:complete len:407 (+),score=50.02,DDE_Tnp_4|PF13359.2|7.7e-26 R_Transcript_261000:1078-2298(+)
ATGCATTCCCTATCTTATTTCTCATCCACAGATATATCAGCTGTCATGGACGACTTTGATATAAAATTGGATGAGATGGAGTTAGTTGCAGCTGCAGTTGGATACTATTGCTTTAATAGTATAACTAAACAGCCTTGTCATAGCCTGTCACCTAATCGCCCTAACTACATGGCTGAGTTGATGGAGGGTCCAGAAGATATATGCCGTGAAATGCTTCGGATGGATAAACATGTCTTCCACAAGTTAAGTGGCATTCTTCGACAAAGAGGCATGCTACGTGATACCGCTGGTGTGTCTATAGAAGAGCAACTGGCCATTTTTTTGAACATAATTGGACATAATGAGCGAAATCGAGTCATACAAGACAGGTTTCAGCATTCTGGGGAAACCATCAGCCGGCATTTCAACAATGTTTTGAAATCTATTAAGTCTTTATCTCGTGAATTTCTACAGCAACCACCTGTCGATACACCTCTACAAATCCTTAGAAGCAAACGGTATTTTCCATATTTCAAGGATTGCATTGGAGTCATAGATGGCATGCATATCCCTGCTCATGTGCCAGCGAAAGATCAATCTCGTTTCCGTAACAAGAATGGTTCCCTGTCTCAAAATGTCTTAGCTGCCTGCACGTTTGATCTGCAGTTTATATTTATATATCCTGGATGGGAAGGTTCAGCTTCAGATTCTCGTGTGCTGCAGGCTGTATTAGATGATCTGGATCAGAATTTTCCTCTCGTCCCTGAAGGTAAGTATTATCTTGTTGATGCGAGTTACCTGAATATGGAAGGTTTTGTTGGTCCATTCCAAGGAGTGCGCTACTGCATGCATGAATATAAAGGCGCTAACTGTCTCCCACGAAATGTTCAAGAGCTCTTTAATCATCGGCACTCATCATTAAGACATGCCATTTTGAGAACCTTTCATGTGTTAAAGGAACGATTTCCTGTTTTGAAACTCGCCCCTCAGTATGCATTTCAAGTTCAAAGAGATGTCGTCATTGCTGCGTGTGTCATCCATAATTTTATCCGACGTCAGGACAGTAATGATTGGCTATTTGCCAGTGTCGAAGAAAAGATTGTGGAAGAGAGTCCAGATATCGATGATCTGCCAGATATACAACAGAGATCTCCGTTGAAACCGCAAATGGGGCTGTTTTTAAGAGATTCAATCGCTACATCTATGTGGAATGACTTCTTGAATGAATGGAATGAATGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_261000.p1 GENE.R_Transcript_261000~~R_Transcript_261000.p1 ORF type:complete len:407 (+),score=50.02,DDE_Tnp_4|PF13359.2|7.7e-26 R_Transcript_261000:1078-2298(+)
MHSLSYFSSTDISAVMDDFDIKLDEMELVAAAVGYYCFNSITKQPCHSLSPNRPNYMAELMEGPEDICREMLRMDKHVFHKLSGILRQRGMLRDTAGVSIEEQLAIFLNIIGHNERNRVIQDRFQHSGETISRHFNNVLKSIKSLSREFLQQPPVDTPLQILRSKRYFPYFKDCIGVIDGMHIPAHVPAKDQSRFRNKNGSLSQNVLAACTFDLQFIFIYPGWEGSASDSRVLQAVLDDLDQNFPLVPEGKYYLVDASYLNMEGFVGPFQGVRYCMHEYKGANCLPRNVQELFNHRHSSLRHAILRTFHVLKERFPVLKLAPQYAFQVQRDVVIAACVIHNFIRRQDSNDWLFASVEEKIVEESPDIDDLPDIQQRSPLKPQMGLFLRDSIATSMWNDFLNEWNEW*

Click here to download the sequence:
Link to NCBI Protein BLAST