Transcript Information: R_Transcript_26330.p1


Annotated TAIR IDAT1G29900.1
Annotated Gene Namecarbamoyl phosphate synthetase B
Annotated Gene Symbol(s)CARB
Annotation TypeOrtholog
Chromosome Positionchr1:10468164-10471976 | Forward length=1187
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 129.346687857883
Replicate 217.783848704252
Replicate 321.977301074922
Condition 2: 8 Hour
Replicate 127.756166436395
Replicate 238.295136610517
Replicate 345.83166603812
Condition 3: 24 Hour
Replicate 136.522902115418
Replicate 230.575337768848
Replicate 337.873314872425


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_26330.p1 GENE.R_Transcript_26330~~R_Transcript_26330.p1 ORF type:complete len:1183 (+),score=302.01,CPSase_L_D2|PF02786.13|5.9e-72,CPSase_L_D2|PF02786.13|1e-36,ATP-grasp_4|PF13535.2|5.9e-16,ATP-grasp_4|PF13535.2|8.4e+03,ATP-grasp_4|PF13535.2|3.7e-20,CPSase_L_D3|PF02787.15|8.9e-39,MGS|PF02142.18|2.3e+03,MGS|PF02142.18|2.7e-17,ATPgrasp_Ter|PF15632.2|0.014,ATPgrasp_Ter|PF15632.2|0.15,ATPgrasp_Ter|PF15632.2|0.00087,Dala_Dala_lig_C|PF07478.9|0.0034,Dala_Dala_lig_C|PF07478.9|2.2e-06,ATP-grasp|PF02222.18|0.025,ATP-grasp|PF02222.18|2e-06,ATP-grasp_3|PF02655.10|0.022,ATP-grasp_3|PF02655.10|0.49 R_Transcript_26330:240-3788(+)
ATGGGTTTTTCCAACAAATTGATTTCACCTTCAATCTCAACCCCTAAACAACAACCCTACCTACCCAAATCAACCTTCTTTTCCTCTCATATTACTCTTTTCCACTACAAAAAATCCACCTTTGCTTCCCCATCTTCTCTAAACTTCAATTTCCACTCTTCTATCAAACGTTTATCGAAATCCCCTACATGGGCAACCGCCATTCGAAGCCAACATGGGGAGAAAGACAAGGCGGGTGCAACAACAACAGGCAAAAGGACTGATTTGAAGAAGATAATGATATTGGGTGCAGGCCCAATTGTGATAGGTCAAGCTTGTGAGTTTGATTATTCAGGTACTCAAGCTTGTAAAGCTTTGAAAGAAGAAGGGTATGAAGTTGTTTTGGTTAATTCTAATCCTGCTACTATTATGACTGATCCTGAATTAGCTGATAGAACTTATGTTACGCCCTTAACCCCTGATTTAGTTGAACAAATTTTAGAAAAGGAAAGACCTGATGCTTTATTGCCCACTATGGGTGGTCAAACTGCTTTGAATTTGGCTGTTGCTTTGGCTGAAAATGGGGCTTTGCAAAAATATGGGGTTGAGTTAATTGGGGCTAAACTTGATGCTATTAAGAAAGCTGAGGATAGGGAGTTGTTTAGGCAAGCAATGAAAAATATTGGCATTAAGACTCCACCTTCAGGTATTGGGAATACTATTGAAGAGTGTTTTGATATTGCTGCTCAGATTGGGGAGTTTCCCTTGATTATTAGGCCTGCTTTTACTCTTGGTGGTACAGGAGGGGGTATTGCTTATAATAAGGAGGAATTCGAGGCCATTTGTAAGTCGGGTTTGGCTGCTAGTTTGACCTCTCAAGTCTTGGTGGAGAAGTCTTTGTTGGGTTGGAAGGAGTATGAGCTTGAGGTCATGAGGGATTTAGCTGACAATGTGGTTATCATCTGTTCTATTGAGAATATTGATCCTATGGGGGTGCATACCGGGGATTCAATTACTGTGGCCCCTGCTCAGACCTTGACTGATAGGGAGTATCAACAGCTTAGGGATTACTCCATTGCTATCATCAGGGAGATTGGAGTTGAGTGTGGTGGTTCCAATGTTCAGTTTGCTGTCAATCCTAAAGATGGTGAGGTGATGGTTATTGAGATGAATCCTAGGGTGTCAAGATCATCTGCATTGGCTTCAAAAGCCACTGGTTTTCCCATAGCAAAGATGGCTGCGAAGTTGTCTGTTGGGTATTCATTGGATCAGATTCCCAATGACATTACTAGGAAAACTCCTGCCAGTTTTGAGCCTTCCATTGATTATGTGGTGACAAAGATTCCTCGATTTGCATTTGAGAAATTCCCTGGTTCTCAGCCATTGCTGACAACTCAGATGAAATCTGTTGGTGAGGCCATGGCTTTGGGTCGCACATTTCAGGAGTCCTTCCAAAAGGCAGTTAGATCTCTAGAACTTGGTTACTCAGGATGGGGCTGTGCAAAGATAAAGGAGTTGGATTGGGATTGGGACCAGTTAAAGTACAATCTCCGTGTTCCAAACCCTGATCGCATCCATGCTATTTATGCTGCAATGAAGAAAGGAATGAAAGTTGACGACATTCATGAGTTGAGTTTTGTAGATAAATGGTTTCTCAATCAACTCAAAGAACTGGTTGATGTGGAGCAATACCTTTTATCTCGGCAGCTGTCTGATCTGACAAAGGATGACTTTTATGAGCTAAAGAAAAGAGGCTTTAGTGATAAACAGATCGCCTTTGCAACTAAATCAACAGAAGGGGATGTTCGATCACAACGGTTGTCCTTCGGTGTCACTCCGGCTTATAAACGTGTTGATACCTGTGCTGCCGAATTTGAGGCGAATACACCTTACATGTATTCTTCTTATGATTTTGAGTGCGAATCATCTCCTACTCAAAAGAAAAAGGTTTTGATCCTTGGTGGTGGACCAAATCGTATTGGCCAGGGGATTGAGTTTGACTACTGCTGCTGCCATACATCATTTGCCCTTCAGGATGCTGGCTATGAGACCATCATGATGAACTCCAATCCAGAGACCGTATCGACAGATTACGACACAAGTGATCGGCTCTATTTTGAACCTCTTACAGTTGAAGATGTCCTGAATGTCATTGACCTTGAACGACCAGATGGCATCATTGTGCAGTTTGGTGGCCAAACACCCTTGAAACTGGCTCTGCCAATTCAGCAATATTTGGATGAACACAAGCCTATGAGTGCGAGTGGGGCAGGTCCGACTCGCATATGGGGAACATCTCCAGATTCCATTGATGCAGCCGAGGACAGAAAAAGGTTTAATGCCATCTTGGATGAATTAAAGATTGAACAGCCAAAGGGTGGCATTGCCAGGAGTGAAGCTGATGCTCTTGCAATTGCAGCGGACATAGGATACCCTGTTGTCGTGAGGCCTTCCTACGTCCTGGGTGGTAGGGCAATGGAGATTGTTTATAATGATGAAAAACTGGTGACTTATCTGGAGAATGCTGTTGAGGTGGATCCCGAGCGACCTGTTTTGATCGACAAATATCTGTCTGATGCTATTGAAATTGATGTTGATTGTTTGGCTGACTTGTATGGTAATGTGGTAATTGGTGGGATAATGGAGCACATTGAACAGGCTGGAGTCCATTCTGGTGATTCAGCTTGTTCACTGCCCACGAAAACTGTGTCATCTTCATGCTTAGAGACTATCAGGTCTTGGACAACAAAACTGGCAAAGCGTCTGAATGTGTGTGGGCTCATGAACTGTCAATATGCCATCACAGCATCTGGGGATATTTTCTTGTTGGAGGCTAACCCTCGTGCGTCACGTACAGTGCCATTCGTATCCAAGGCAATAGGCCACCCATTAGCTAAATATGCTTGCTTGGTGATGTCGGGGAAGTCTCTGGGTGATCTGAACTTTACCAAGGAGGTCATTCCTAAACATGTATCAGTCAAGGAAGCTGTCCTCCCATTTGAGAAATTCCCTGGTTGTGACATCTTGTTGGGCCCTGAGATGCGCAGTACTGGTGAAGTTATGGGTATTGCCTTTGATTTCTCATCATCCTTTGCCTTGGCTCAAATTGCTGCAGGGCAGAAGCTACCATTTTCCGGCACTGTGTTCCTAAGTTTGAATGACTTGACAAAGCCCCACCTTCCAGCAATCGCCCGTGCCTTCCTAGGGCTTGGATTCAATATCGTCTCTACTTCTGGGACTGCCCGTGTTCTTGAACTGGAAGGCATACCCGTTGAACGGGTGTTGAAGATGCATGAAGGGAGACCTCATGCAGGTGACATGGTTGCAAATGGGCAGATTCATTTAATGGTGATTACAAGCTCGGGTGATGCACTAGATCAGATAGATGGCCGGCAGCTGAGAAGGATGGCTCTTGCTTACAAGGTTCCTATCATAACAACAGTTGCTGGTGCTCTTGTAACAGCAGAGGCAATCAAAACCTTGAAGTCGAGCCCTGTTAAATTGTATGCTCTTCAGGACTTTTTCAAGGCAGAAAGTGGTGCTGCTAGGAGATTGCAATCTGTATCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_26330.p1 GENE.R_Transcript_26330~~R_Transcript_26330.p1 ORF type:complete len:1183 (+),score=302.01,CPSase_L_D2|PF02786.13|5.9e-72,CPSase_L_D2|PF02786.13|1e-36,ATP-grasp_4|PF13535.2|5.9e-16,ATP-grasp_4|PF13535.2|8.4e+03,ATP-grasp_4|PF13535.2|3.7e-20,CPSase_L_D3|PF02787.15|8.9e-39,MGS|PF02142.18|2.3e+03,MGS|PF02142.18|2.7e-17,ATPgrasp_Ter|PF15632.2|0.014,ATPgrasp_Ter|PF15632.2|0.15,ATPgrasp_Ter|PF15632.2|0.00087,Dala_Dala_lig_C|PF07478.9|0.0034,Dala_Dala_lig_C|PF07478.9|2.2e-06,ATP-grasp|PF02222.18|0.025,ATP-grasp|PF02222.18|2e-06,ATP-grasp_3|PF02655.10|0.022,ATP-grasp_3|PF02655.10|0.49 R_Transcript_26330:240-3788(+)
MGFSNKLISPSISTPKQQPYLPKSTFFSSHITLFHYKKSTFASPSSLNFNFHSSIKRLSKSPTWATAIRSQHGEKDKAGATTTGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLVNSNPATIMTDPELADRTYVTPLTPDLVEQILEKERPDALLPTMGGQTALNLAVALAENGALQKYGVELIGAKLDAIKKAEDRELFRQAMKNIGIKTPPSGIGNTIEECFDIAAQIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKSGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDREYQQLRDYSIAIIREIGVECGGSNVQFAVNPKDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDITRKTPASFEPSIDYVVTKIPRFAFEKFPGSQPLLTTQMKSVGEAMALGRTFQESFQKAVRSLELGYSGWGCAKIKELDWDWDQLKYNLRVPNPDRIHAIYAAMKKGMKVDDIHELSFVDKWFLNQLKELVDVEQYLLSRQLSDLTKDDFYELKKRGFSDKQIAFATKSTEGDVRSQRLSFGVTPAYKRVDTCAAEFEANTPYMYSSYDFECESSPTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQQYLDEHKPMSASGAGPTRIWGTSPDSIDAAEDRKRFNAILDELKIEQPKGGIARSEADALAIAADIGYPVVVRPSYVLGGRAMEIVYNDEKLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDCLADLYGNVVIGGIMEHIEQAGVHSGDSACSLPTKTVSSSCLETIRSWTTKLAKRLNVCGLMNCQYAITASGDIFLLEANPRASRTVPFVSKAIGHPLAKYACLVMSGKSLGDLNFTKEVIPKHVSVKEAVLPFEKFPGCDILLGPEMRSTGEVMGIAFDFSSSFALAQIAAGQKLPFSGTVFLSLNDLTKPHLPAIARAFLGLGFNIVSTSGTARVLELEGIPVERVLKMHEGRPHAGDMVANGQIHLMVITSSGDALDQIDGRQLRRMALAYKVPIITTVAGALVTAEAIKTLKSSPVKLYALQDFFKAESGAARRLQSVS*

Click here to download the sequence:
Link to NCBI Protein BLAST