Transcript Information: R_Transcript_26626.p1


Annotated TAIR IDAT5G60710.1
Annotated Gene NameZinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24410953-24414849 | Reverse length=704
E-Value7.6E-242
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.586223568637
Replicate 214.340974422273
Replicate 318.531976039328
Condition 2: 8 Hour
Replicate 115.717717021839
Replicate 217.882774204556
Replicate 319.620109622832
Condition 3: 24 Hour
Replicate 117.690299733814
Replicate 213.367709964183
Replicate 316.923782271169


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_26626.p1 GENE.R_Transcript_26626~~R_Transcript_26626.p1 ORF type:complete len:754 (+),score=158.65,VWA|PF00092.24|5e-23,VWA_2|PF13519.2|1.8e-21,Vwaint|PF14624.2|1.9e-21,VWA_3|PF13768.2|4.8e-19,VWA_CoxE|PF05762.10|3.3e-09,zf-RING_11|PF17123.1|2e-08,zf-RING_2|PF13639.2|4.6e-08,zf-C3HC4|PF00097.21|3.3e-07,zf-rbx1|PF12678.3|3.7e-06 R_Transcript_26626:362-2623(+)
ATGGGGAGCAGCAGTAAATGGAGGAAAGCGAGACTAGCTTTCGGGTGCATTCAGGTCCCTCGTACTCTTGGTGGTGCTGATGATGATTCCTCTAGTTCATCTTCTACCCTCGCCATCAACAACAATAACGATAACCCACAAAATAATACTCCTCCTAACAATAACAACGACGTCGTTTCATCTTCTCTTGAACGGCGTCGTTTATCAGACGCTGCGCTGCCTTCGTCGTCTCTCTCTCCTGCTACTGATTTTCGCCCTCCTTCCCCCGTCACTCCCACCCCTTCTTCCTCTGGCCTTCTTCGCTTCTCTCGCCACTCCTCCAGATCTTCCAAGATTGCCAAGTCTGGTGATATAGCAAATTTGCAGAAGACGTGTGCAATATGCCTGAGTACTATGATCCCCGGCCAGGGCCATGCAATTTTTACAGCTGAATGCTCACATTCGTTTCACTTCTACTGCATCACTTCTAATGTAAAGCATGGAAACCCAACTTGCCCAGTTTGCAGGGCTAAGTGGAAAGAAATTCCCTTCCAACGTCAAAATTCCAAGGTTCTTCGTAGCTTGAGCAGAGATGAGCAGTTGATGGCTGCCTTGCAGCAGTTTCCTCTTCCTCAACCAGATGCCAATCAAAACTTCTCGTCAATATTTCATGTCGCTGAACCTATTATCTTTGATGATGATGACCCCATAGAGCAGCAGGATACGGTTACAAGCCAATCCGTCTCTGATGAGAGCTCTGGCTCTATTGAAAGAGTGGAAATAAGGGCATGCCCTGAAGTTCCGGCCGTCGCCAAATCATCCTCGTTTGAGAACTTCACAGTTCTGATTCATCTCAAGGCTCCTGTAACAAAAAAATTAATAGATTTTGAGTCCAACCTGTCATCCGGGTCTCCGGATTCTCGTGCACCGGTTGATCTTGTTACTGTTCTAGATGTCAGTGGCAGCATGGCAGGTACCAAGCTTGCATTGCTTAAACGAGCCATGGGGTTTGTGATACAGCACCTTGGCCCTCATGATCGGCTCTCCGTTGTTGCGTTTTCTTCTACAGCTCGTCGTGTCATCCCTCTTCGTCTTATGACCGACAGTGGAAGACAGCATGCACTTCAGGCTGTTAATTCTCTTTCGTCTAATGGAGGGACCAATATTGCTGAAGGTCTCAAAAAGGGTGCTAAGATAATGCTAGAGCGGAAATGTAAGAACCCTGTAAGCAGTATCATTCTGTTATCTGATGGGCAGGACACCTATACCTCACCTGGTCCTGTTGGAGCACAATCAAGGACAGATTACAAGTCTCTTCTTGCAGTTTCTATCCAACAGAATTCAGGCACAGCCTTCCAGATTCCAGTGCACACATTTGGGTTTGGGGCAGACCATGACTCTGATTCAATGCATTCCATCTCTGAAGGTTCTGGAGGCACATTTTCCTTTATAGAAGCTGAGAGTGTAATTCAGGATGCATTTGCCCAGTGCATGGGAGGTATCCTTAGTGTGGTTGTACAAGAGCTGAAGGTCAAAGTTGAGAGTCTCTATCCTGGTCTGCTGCTTGGTTCAATCAAAACCGGAAGTTACAAGACTCAGTTACTGCCCCATGCAAGAATGGGCCAGATTAATGTTGGGGATTTGTATGCTGAAGAGGAGAGGGGTTTTCTGGTGACGTTAAATGTTCCTCAGGCGTCTGTAAATGAGATGCCGTTGCTCAAGGTCACTTACTCATACAAGGATCCGATTTCAAAAGAGGCGATAACTTTGGAACAAGCTGAAGAAGTCAAGATCCAAAGGCCTGAGAAAACAGAAAAACTCGTTGTTTCCATGGAGGTGGACAGGCAACGCAACAGGCTAAAGGCTGCGGAAGCCATGTCAGGAGCTAAATCTGCAGCTGAACGGGGTGATTTGGCTGGTGCAGTGTCTATCCTTGATACCTGTCGTAAGACATTGTCAGAAAGTGCGTCTGCACAAGCTGGTGATCCCTTATGCATGGCGCTGGGCAACGAATTGAAGGAGATGCAAGAGAGGATGGCTAACCGTCAAGTTTATGAGGCATCTGGGAGGGCATATGTTTTGTCTGGATTGAGTTCACATTCATGGCAAAGGGCAACTGCAAGAGGCGACTCCACTAGCAGCACCAATCTATCTCAAGCTTACCAAACCTCAACCATGGCTGACATGATTACGCGATCACAGACCATGATCCTAGGAAGCTTGTCACCTCCTCCTCCCATCAGGCCGCCTCGATCACTATCCAGCCGTCCACAACCTAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_26626.p1 GENE.R_Transcript_26626~~R_Transcript_26626.p1 ORF type:complete len:754 (+),score=158.65,VWA|PF00092.24|5e-23,VWA_2|PF13519.2|1.8e-21,Vwaint|PF14624.2|1.9e-21,VWA_3|PF13768.2|4.8e-19,VWA_CoxE|PF05762.10|3.3e-09,zf-RING_11|PF17123.1|2e-08,zf-RING_2|PF13639.2|4.6e-08,zf-C3HC4|PF00097.21|3.3e-07,zf-rbx1|PF12678.3|3.7e-06 R_Transcript_26626:362-2623(+)
MGSSSKWRKARLAFGCIQVPRTLGGADDDSSSSSSTLAINNNNDNPQNNTPPNNNNDVVSSSLERRRLSDAALPSSSLSPATDFRPPSPVTPTPSSSGLLRFSRHSSRSSKIAKSGDIANLQKTCAICLSTMIPGQGHAIFTAECSHSFHFYCITSNVKHGNPTCPVCRAKWKEIPFQRQNSKVLRSLSRDEQLMAALQQFPLPQPDANQNFSSIFHVAEPIIFDDDDPIEQQDTVTSQSVSDESSGSIERVEIRACPEVPAVAKSSSFENFTVLIHLKAPVTKKLIDFESNLSSGSPDSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQHLGPHDRLSVVAFSSTARRVIPLRLMTDSGRQHALQAVNSLSSNGGTNIAEGLKKGAKIMLERKCKNPVSSIILLSDGQDTYTSPGPVGAQSRTDYKSLLAVSIQQNSGTAFQIPVHTFGFGADHDSDSMHSISEGSGGTFSFIEAESVIQDAFAQCMGGILSVVVQELKVKVESLYPGLLLGSIKTGSYKTQLLPHARMGQINVGDLYAEEERGFLVTLNVPQASVNEMPLLKVTYSYKDPISKEAITLEQAEEVKIQRPEKTEKLVVSMEVDRQRNRLKAAEAMSGAKSAAERGDLAGAVSILDTCRKTLSESASAQAGDPLCMALGNELKEMQERMANRQVYEASGRAYVLSGLSSHSWQRATARGDSTSSTNLSQAYQTSTMADMITRSQTMILGSLSPPPPIRPPRSLSSRPQPR*

Click here to download the sequence:
Link to NCBI Protein BLAST