Transcript Information: R_Transcript_26664.p1


Annotated TAIR IDAT3G63520.1
Annotated Gene Namecarotenoid cleavage dioxygenase 1
Annotated Gene Symbol(s)CCD1, ATCCD1, ATNCED1, NCED1
Annotation TypeOrtholog
Chromosome Positionchr3:23452940-23455896 | Forward length=538
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.131621017923
Replicate 221.486339743788
Replicate 328.088513066736
Condition 2: 8 Hour
Replicate 121.320726210797
Replicate 223.685673763554
Replicate 326.266064919267
Condition 3: 24 Hour
Replicate 135.487741513561
Replicate 232.112773716801
Replicate 335.523312454139


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_26664.p1 GENE.R_Transcript_26664~~R_Transcript_26664.p1 ORF type:complete len:557 (+),score=115.46,RPE65|PF03055.11|2.7e-123 R_Transcript_26664:222-1892(+)
ATGGGGGAAGAAGAAGCAAAGAAGCTGAAAGAGGAGGAGATGAGTGCTGAAGGCCAAGGGAAGGGCAATAATGGAATTGTGGAAGTGAAGCCACAACCAAACAAAGGGTTAACTTCAAAAGCAATAGACTTGTTTGAGAAACTCATAGTCAAGTTAATATATGATTCTTCTAAACCCCATCACTGGCTTTCTGGTAACTTCGCTCCTGTTACTACAGAAACCCCTCCTGCCTCCAATTTGATTGTACACGGCCATCTCCCTGAATGCTTGAATGGGGAGTTTGTTAGGGTTGGCCCCAACCCAAAGTTTGCTCCTGTTGCTGGATATCACTGGTTTGATGGAGATGGCATGATACACGGAATGCGGATTAAAAATGGGAAAGCAACATATGTCTCCCGTTATGTTAGAACATCAAGGATGAAACAAGAAGAGTTCTTTGGAGGAGCGAAATTTATGAAGATTGGAGATCTCAAAGGGCTATTTGGGTTACTTATGGTTAATCTGCAAATGCTGAGAGCAAAAATCAAAGTACTGGATATCTCATATGGCACGGGGACAGCTAACACTGCTCTTATATATCACCATGGAAAACTTCTGGCACTGTCAGAGGGAGACAAACCTTATGTTCTTCGTGTATTGGAAGATGGAGATCTGCAAACCCTTGGAATGCTGGACTATGATAAGAGGTTGGCCCACTCCTTCACAGCTCATCCAAAAGTTGACCCATTCACAGGAGAGATGTTCACTTTTGGATACTCCCACTCTCCACCATATGTTACATATAGAGTGATATCAAAGGATGGTTACATGCACGATCCAGTACCTATAACCATACCAGCACCTGTCATGATGCACGATTTCGCCATAACTGAAAATTATGCAATTTTCATGGATCTTCCATTATACTTCAGACCTAAGGAAATGGTCAAGGAAAAAAAACTAATTTTCAGTTTTGACTCGACCAAAAAGTCCCGATTTGGTGTACTACCTCGATATGCGAAGAATGAGAGTCTAATCAAATGGTTTGAGCTTCCAAATTGCTTCATATTCCATAATGCCAATGCATGGGAGGAAGGAGATGAGATTGTTTTAATCACCTGTCGCCTTGAGAATCCAGATTTAGATATGATCAGTGGAGGTGTCAAAGACAAGCTTGAAAATTTCGCAAATGAGCTGTATGAAATGAGATTCAACATGAAATCTGGTCTTGCTTCTCAAAGAAAACTATCTGGATCTGCTGTGGACTTCCCTAGAATCAATGAAAACTACACTGGAAGGAAGCAGAGATATGTCTATGGTACTATCTTGGACAGCATAGCCAAAGTACAAGGAATAGTCAAATGTGACTTACATGCTGAACCAGATGCCAGCCAAACAAAGATTGAGGTGGGAGGCACCGTGCAAGGAATCTTTGACCTTGGTCCAGGAAGATTTGGGTCAGAGGCTATCTTTGTGCCTCGAGAACCCGGTACCACTGGTGAAGAGGATGATGGATATCTAATTTTTTTCGTGCATGATGAAAATACTGGAAAGTCATATGTCAATGTAATTGATGCAAAAACCATGTCAGCTGATCCCGTTGCAGTTGTTGAGTTACCCAATAGAGTTCCTTATGGGTTTCATGCATTCTTTGTCACAGAGGATCAACTGAAAGAACAAGAAGCAGTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_26664.p1 GENE.R_Transcript_26664~~R_Transcript_26664.p1 ORF type:complete len:557 (+),score=115.46,RPE65|PF03055.11|2.7e-123 R_Transcript_26664:222-1892(+)
MGEEEAKKLKEEEMSAEGQGKGNNGIVEVKPQPNKGLTSKAIDLFEKLIVKLIYDSSKPHHWLSGNFAPVTTETPPASNLIVHGHLPECLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGMRIKNGKATYVSRYVRTSRMKQEEFFGGAKFMKIGDLKGLFGLLMVNLQMLRAKIKVLDISYGTGTANTALIYHHGKLLALSEGDKPYVLRVLEDGDLQTLGMLDYDKRLAHSFTAHPKVDPFTGEMFTFGYSHSPPYVTYRVISKDGYMHDPVPITIPAPVMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFSFDSTKKSRFGVLPRYAKNESLIKWFELPNCFIFHNANAWEEGDEIVLITCRLENPDLDMISGGVKDKLENFANELYEMRFNMKSGLASQRKLSGSAVDFPRINENYTGRKQRYVYGTILDSIAKVQGIVKCDLHAEPDASQTKIEVGGTVQGIFDLGPGRFGSEAIFVPREPGTTGEEDDGYLIFFVHDENTGKSYVNVIDAKTMSADPVAVVELPNRVPYGFHAFFVTEDQLKEQEAV*

Click here to download the sequence:
Link to NCBI Protein BLAST