Transcript Information: R_Transcript_26667.p2


Annotated TAIR IDAT3G63520.1
Annotated Gene Namecarotenoid cleavage dioxygenase 1
Annotated Gene Symbol(s)CCD1, ATCCD1, ATNCED1, NCED1
Annotation TypeOrtholog
Chromosome Positionchr3:23452940-23455896 | Forward length=538
E-Value9.9E-41
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.3276931309692
Replicate 22.0996300416298
Replicate 32.4433853435896
Condition 2: 8 Hour
Replicate 12.6118255943728
Replicate 23.4286685489818
Replicate 36.5345798233393
Condition 3: 24 Hour
Replicate 17.3464983128653
Replicate 26.1754724893616
Replicate 39.6305900622348


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_26667.p2 GENE.R_Transcript_26667~~R_Transcript_26667.p2 ORF type:complete len:150 (+),score=37.66,RPE65|PF03055.11|1.2e-06 R_Transcript_26667:110-559(+)
ATGGGATGGAGAGAAACTAATCAAAGACATACAAATGCACAAGCAGGCATTCACTACGTGGCAACACAGTCACCTGAGAAAGTCCACACTCACCCACCCAGTAGAGTAGAGAGAATGGGGGAAGAAGAAGCAAAGAAGCTGAAAGAGGAGGAGATGAGTGCTGAAGGCCAAGGGAAGGGCAATAATGGAATTGTGGAAGTGAAGCCACAACCAAACAAAGGGTTAACTTCAAAAGCAATAGACTTGTTTGAGAAACTCATAGTCAAGTTAATATATGATTCTTCTAAACCCCATCACTGGCTTTCTGGTAACTTCGCTCCTGTTACTACAGAAACCCCTCCTGCCTCCAATTTGATTGTACACGGCCATCTCCCTGAATGCTTGAATGGGGAGTTTGTTAGGGTTGGCCCCAACCCAAAGTTTGCTCCTGTTGCTGGATATCACTGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_26667.p2 GENE.R_Transcript_26667~~R_Transcript_26667.p2 ORF type:complete len:150 (+),score=37.66,RPE65|PF03055.11|1.2e-06 R_Transcript_26667:110-559(+)
MGWRETNQRHTNAQAGIHYVATQSPEKVHTHPPSRVERMGEEEAKKLKEEEMSAEGQGKGNNGIVEVKPQPNKGLTSKAIDLFEKLIVKLIYDSSKPHHWLSGNFAPVTTETPPASNLIVHGHLPECLNGEFVRVGPNPKFAPVAGYHW*

Click here to download the sequence:
Link to NCBI Protein BLAST