Transcript Information: R_Transcript_272328.p1


Annotated TAIR IDAT1G18485.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:6363172-6366084 | Forward length=970
E-Value7E-82
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.29599396142787
Replicate 20.11349351576377
Replicate 30.18573030483367
Condition 2: 8 Hour
Replicate 10.52942410696746
Replicate 20.18130444736096
Replicate 30.88305132747828
Condition 3: 24 Hour
Replicate 10.62048127642443
Replicate 20.35765284687423
Replicate 30.6507155447456


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_272328.p1 GENE.R_Transcript_272328~~R_Transcript_272328.p1 ORF type:3prime_partial len:370 (+),score=57.11,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|87,PPR|PF01535.16|2.6e-05,PPR|PF01535.16|0.044,PPR|PF01535.16|4.3e-05,PPR|PF01535.16|4.1e+03,PPR|PF01535.16|0.056,PPR_2|PF13041.2|3e+02,PPR_2|PF13041.2|1.3e-07,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|6.5,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|1.6,PPR_1|PF12854.3|6.8e+02,PPR_1|PF12854.3|4.5,PPR_1|PF12854.3|0.49,PPR_1|PF12854.3|8.6e+02,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|36,PPR_3|PF13812.2|67,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|7.8e+02,PPR_3|PF13812.2|26,PPR_3|PF13812.2|33 R_Transcript_272328:100-1206(+)
ATGACATTGTTTTTATCACCACCATCTTCATCTCATCAACACAATCACCCATTTCACTTCTACTCAAATACCCAGATTATACCATACAAGAAGAAAAAAACCCTTAATAGTTCAATCAAAAGCTCACTTACATCTTTTTCTTTTTCTTCTCCAAAACCCCATCAAACTAACCCTTCATTGCCTCTGTCCAAGCTTGTAAGCAATCTATGCCACTCCCACAACCTCACTGAAGCCCTATCTCTAATTCAAGAACATTCAACTAATTTTAGCGGTAATTCAATCCAAACAGTTGAGGCTATTGGTTTGTTGATTCAATCATGTGGGCAACTCAAAAACATAGAAATTGGCAGGAAAGTTCATGAAATTGTCTCCACCCATTTTGGTAATGATATTTTTCTTAACACCTGTCTTGTTACAATGTATTCTTCATGTGGGTCTCCTTTGAATTCTCTTATAGTGTTTGATCAGTTAAAGTTGAAGAATATATTTGTATGGAATGCCATGATTAGTTCTTACACAAAAAATGAGTTTTATGAGGATGCAATATCGATGTTTCTTGAGTTGATTTATGAGACTGGTTTGGAGCCTGATAATTTTACTTTGCCTTGTGTTATTAAGTCCTGTGCTTTGCTTCAAAGGGCTCGTTTCGGAAAGGCAATTCATGGGTTGGCTGTTAAAATGGGTTTGGTTTCGGATGTTTTCGTGGGCAATGCTTTGGTTGCAATGTATGGGAAATTTGGGTTAGTTGGGGATTCTGTTGGAGTGTTTGAGAATATGGTTGAGAGAAACTTGGTTTCGTGGAACTCATTGATTCGTGTGTATTCGGAGAATGGATTTTATATGGAGAGTTTTGATATGCTTGTGAGAATGTTGGAAGATGTGGAAGGTTTGGGTCCAGATGTTGCGACATTAGTGACAATATTACCAGTTTGTGCAGGGAAAGGGGATGTTGAAATGGGAAAAATGGTTCATTGTTTGGCCGTAAAACTAGGACTATTAAGTCATGAGGTAACTATGAGTAATGCCCTAATTGACATGTATACCAAATGTGGCTTTTCATATGAAGCTCAAATGCTGTTTGAGAAACATGAAAATAAAAATGTGGTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_272328.p1 GENE.R_Transcript_272328~~R_Transcript_272328.p1 ORF type:3prime_partial len:370 (+),score=57.11,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|1.1e+03,PPR|PF01535.16|87,PPR|PF01535.16|2.6e-05,PPR|PF01535.16|0.044,PPR|PF01535.16|4.3e-05,PPR|PF01535.16|4.1e+03,PPR|PF01535.16|0.056,PPR_2|PF13041.2|3e+02,PPR_2|PF13041.2|1.3e-07,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|6.5,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|1.6,PPR_1|PF12854.3|6.8e+02,PPR_1|PF12854.3|4.5,PPR_1|PF12854.3|0.49,PPR_1|PF12854.3|8.6e+02,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|36,PPR_3|PF13812.2|67,PPR_3|PF13812.2|1e+04,PPR_3|PF13812.2|7.8e+02,PPR_3|PF13812.2|26,PPR_3|PF13812.2|33 R_Transcript_272328:100-1206(+)
MTLFLSPPSSSHQHNHPFHFYSNTQIIPYKKKKTLNSSIKSSLTSFSFSSPKPHQTNPSLPLSKLVSNLCHSHNLTEALSLIQEHSTNFSGNSIQTVEAIGLLIQSCGQLKNIEIGRKVHEIVSTHFGNDIFLNTCLVTMYSSCGSPLNSLIVFDQLKLKNIFVWNAMISSYTKNEFYEDAISMFLELIYETGLEPDNFTLPCVIKSCALLQRARFGKAIHGLAVKMGLVSDVFVGNALVAMYGKFGLVGDSVGVFENMVERNLVSWNSLIRVYSENGFYMESFDMLVRMLEDVEGLGPDVATLVTILPVCAGKGDVEMGKMVHCLAVKLGLLSHEVTMSNALIDMYTKCGFSYEAQMLFEKHENKNVV

Click here to download the sequence:
Link to NCBI Protein BLAST