Transcript Information: R_Transcript_27247.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.17210082308441
Replicate 30.18776014423076
Condition 2: 8 Hour
Replicate 10
Replicate 20.18328591673103
Replicate 30
Condition 3: 24 Hour
Replicate 10.18817874776807
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_27247.p2 GENE.R_Transcript_27247~~R_Transcript_27247.p2 ORF type:complete len:122 (-),score=36.39,UBN2_3|PF14244.2|2.8e-28 R_Transcript_27247:1881-2246(-)
ATGGGTGACAAAGAGAAAATGGGTGAAGACTCAGAGAACATGGAGCTTAACAAAGGTAATCCTTATAATGACCCTTACTTCTTGGCTAATGGAGATAATCCTGGTAGTGTCTTGGTTTCTGCTCGGAAGAATTCTCTTAGATGGAGTAGGAATGTTAGAAGGGCACTTGGGGCTAAGAATAAGATTGGGTTTATTGATGGTAGTCTTTCTGAACCTCATGAAACTGATAAAGATTTCAAGAAATGGAAGAGATGCGATTGTATGGTTGCAAGTTGGCTGCTTTATTCCATGAATACTGATGTGTCTGATGACTTTTCTCACTGTGAAACTGCTAAAGAGATTTGGAATGAAGTAGCAGAAAGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_27247.p2 GENE.R_Transcript_27247~~R_Transcript_27247.p2 ORF type:complete len:122 (-),score=36.39,UBN2_3|PF14244.2|2.8e-28 R_Transcript_27247:1881-2246(-)
MGDKEKMGEDSENMELNKGNPYNDPYFLANGDNPGSVLVSARKNSLRWSRNVRRALGAKNKIGFIDGSLSEPHETDKDFKKWKRCDCMVASWLLYSMNTDVSDDFSHCETAKEIWNEVAER*

Click here to download the sequence:
Link to NCBI Protein BLAST