Transcript Information: R_Transcript_273855.p1


Annotated TAIR IDAT4G30150.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14742452-14749764 | Forward length=2009
E-Value5E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.584094750551
Replicate 20.33594080666077
Replicate 30.18325390076922
Condition 2: 8 Hour
Replicate 10.78354767831185
Replicate 20.35777410945897
Replicate 30.43563865488929
Condition 3: 24 Hour
Replicate 10.5509873734649
Replicate 21.0586524267477
Replicate 30.17510163749518


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_273855.p1 GENE.R_Transcript_273855~~R_Transcript_273855.p1 ORF type:3prime_partial len:125 (+),score=29.63 R_Transcript_273855:151-522(+)
ATGGCGGACTCAGAAGCGAGGAAAAGCAAATCAGCAAAGAAGGGCAAAAAGAGAAAGCTCACAGATGCAGAACCCCACCAACACAAGTCAAAGCCTTCCAAATTAGCCCGCAACAAAAATGAAAGACGACAATCAGAAGAACAAGAACAACAACGGTGTGCTGTTCAAGAGAAAGAGACACCGGCAAATATGGAGGTGGAAGAAAAACAAACCACGTTGAAAAGTCAAGATGCTCATCAATGGAGGAACTTAGAGCTTGTTTTGTCAATCCAAAGCAAAGAATTAAGTGCCCACAAGAAAGTAGAGTTAATCTTTGATTTTGTGAATTCAAGTGCCAACAAAGAAGAAAATGACACAATACATGATTTCAAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_273855.p1 GENE.R_Transcript_273855~~R_Transcript_273855.p1 ORF type:3prime_partial len:125 (+),score=29.63 R_Transcript_273855:151-522(+)
MADSEARKSKSAKKGKKRKLTDAEPHQHKSKPSKLARNKNERRQSEEQEQQRCAVQEKETPANMEVEEKQTTLKSQDAHQWRNLELVLSIQSKELSAHKKVELIFDFVNSSANKEENDTIHDFN

Click here to download the sequence:
Link to NCBI Protein BLAST