Transcript Information: R_Transcript_274336.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.19840174950781
Replicate 20.91288262679557
Replicate 30.74695883465714
Condition 2: 8 Hour
Replicate 10
Replicate 20.48610612698229
Replicate 30.39460023087798
Condition 3: 24 Hour
Replicate 10.74862414872948
Replicate 20.71919322469274
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_274336.p1 GENE.R_Transcript_274336~~R_Transcript_274336.p1 ORF type:internal len:92 (+),score=14.15,UBN2_3|PF14244.2|6.4e-25 R_Transcript_274336:2-274(+)
TCTTTAAACATAGATCCCTCACTTACTGGTCCTGGAAATTTTAGGCCATGGAAAAGGCAAATGGAGATAGCCTTGGCAACAAAAAGAAAACTTGGTTTTGTTACTGGTCTTGTGAGTAGGCCTGTGACAGTGACTAAAAAACAAGAAGCTTGGGATACTTGTAACAATATTATGATTGCTTGGATCCTTAACAATGTTAATGATTCTATCAAAAGGTCCATTATGTATATGGATTCAGCCAAGAACATTTGGAACAATCTGTGCACTAGGTTC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_274336.p1 GENE.R_Transcript_274336~~R_Transcript_274336.p1 ORF type:internal len:92 (+),score=14.15,UBN2_3|PF14244.2|6.4e-25 R_Transcript_274336:2-274(+)
SLNIDPSLTGPGNFRPWKRQMEIALATKRKLGFVTGLVSRPVTVTKKQEAWDTCNNIMIAWILNNVNDSIKRSIMYMDSAKNIWNNLCTRF

Click here to download the sequence:
Link to NCBI Protein BLAST