Transcript Information: R_Transcript_274878.p1


Annotated TAIR IDAT1G09910.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3220151-3224451 | Reverse length=675
E-Value1.1E-115
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.88841845354826
Replicate 20.37161593657165
Replicate 30.4054289840027
Condition 2: 8 Hour
Replicate 10.65006721098881
Replicate 20.19788391009899
Replicate 30.40158430576077
Condition 3: 24 Hour
Replicate 10.9142489603953
Replicate 20.97589641108749
Replicate 30.4842412541349


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_274878.p1 GENE.R_Transcript_274878~~R_Transcript_274878.p1 ORF type:5prime_partial len:226 (+),score=36.26,CBM-like|PF14683.2|1.2e-55 R_Transcript_274878:1-678(+)
TTCATAGGAGACTATGTACACAACAAGATCATCTCTATTACTCCAGGTTGTGAAATTGATATGGGTGAGATTGTATATGAACCACTACGTGATGGACCGACCTTGTGGGAGATTGGTATCCCTGATAAGACAGCTCGAGAATTTTACATCCCTGATCCCGATCCTTTGTATGCCAATAAACTCTATGTCAACCATCCTGACAGGTTTAGACAGTATGGACTTTGGGATAGATATACTGATTTATATCCTAATGAAGATCTTGTTTATACAATTGGTGTCAGTGATTACAGAAAGGACTGGTTCTTTGCTCAAGTTACCAGGAGAAAAGGCAATACATACCAAGGCACTACTTGGCAGATCAAGTTCAAACTTGACAACGTGAATGAAAATGGTGTCTATAAATTGCGATTGGCACTTGCAGCAGCAAATTCGGCTGAATTACAGGTTCGAGTAAATGATCCAAGTGAAGATCCTCCAATATTCACAACAGGAGAAATGGGGAAAGGTAATGTGATTGCAAGACATGGGATTCATGGGGTCTACTTGCTCTATACTGCGGACATAAAAGGCACTGAGCTCGTTGTTGGTGATAACACCATCTTCTTAACTCAGCCAAATGGTGGCAGCCCTTTTGTTGGGATCATGTACGATTACATTCGCCTTGAAGGACCTCAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_274878.p1 GENE.R_Transcript_274878~~R_Transcript_274878.p1 ORF type:5prime_partial len:226 (+),score=36.26,CBM-like|PF14683.2|1.2e-55 R_Transcript_274878:1-678(+)
FIGDYVHNKIISITPGCEIDMGEIVYEPLRDGPTLWEIGIPDKTAREFYIPDPDPLYANKLYVNHPDRFRQYGLWDRYTDLYPNEDLVYTIGVSDYRKDWFFAQVTRRKGNTYQGTTWQIKFKLDNVNENGVYKLRLALAAANSAELQVRVNDPSEDPPIFTTGEMGKGNVIARHGIHGVYLLYTADIKGTELVVGDNTIFLTQPNGGSPFVGIMYDYIRLEGPQ*

Click here to download the sequence:
Link to NCBI Protein BLAST