Transcript Information: R_Transcript_274880.p1


Annotated TAIR IDAT1G09890.1
Annotated Gene NameRhamnogalacturonate lyase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3214237-3217386 | Reverse length=617
E-Value6.2E-279
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4628966885385
Replicate 20.72664791968973
Replicate 31.0431119123931
Condition 2: 8 Hour
Replicate 10.44600846898443
Replicate 20.97752488923216
Replicate 31.1902695488778
Condition 3: 24 Hour
Replicate 10.91998498908833
Replicate 20.84364378269968
Replicate 30.75749797641357


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_274880.p1 GENE.R_Transcript_274880~~R_Transcript_274880.p1 ORF type:complete len:549 (+),score=78.80,CBM-like|PF14683.2|2.8e-55,Rhamnogal_lyase|PF06045.7|9.2e-49,fn3_3|PF14686.2|2.3e-28,fn3_3|PF14686.2|4.6e+03 R_Transcript_274880:359-2005(+)
ATGGTGGAGGTTTCCTACACCAGGACATGGGATTCCTCCCATGAAGGCAAGTTCCTTCCATTGAACATTGATACAAGGTACATTGTGCTTCGAGGTTCATCAGGTTTTTACTCCTATGCTATATATGAGAAGTTGAAGGACTGGCCTGGATTCAATCTTCCTCAAGTTAGGATAGTTTACACTCTTAACAAAGACTTGTTTCATTACATGGTTGTAGCTGATAATAGGCAAAGGAAAATGCCTCTTCCAGATGACAGATCACCTGAAAGATGCAAAATTCTGTCACCCCCTGAAGCTGTCCTGCTTACAAACCCCATCGAGGATGAATTCAAGGGAGAGGTGGATGACAAATACCAATATTCATGTGAAAACAAGGACCTGCAAGTTCACGGATGGATATGCACCGATCCCCCTACTGGGTTCTGGCAGATTACACCTAGTGATGAGTTCCGAACTGGTGGACCTCTCAAGCAAAATCTCACCTCTCATGTCGGCCCCTATAACCTCGCTATGTTTATTAGTGCACATTATCTTGGGGAGGAAATGGTGTCTAAGTTTGCAGAAGGTGAGGAGTGGAAAAAGGTATTAGGTCCTGTTTTTACATACTTGAATTGTGTGCCTAAGGAAGTCGATTGGCATTGGTTGTGGGAGGACGCCAAGCAACAGACATTGGTTGAAACAGAAAGTTGGCCTTACTCTTTCCCGGCTTCAGAAGATTATCTGAAATCCAATCAACGTGGGAATCTGGTTGGTAGATTGGTAGTCCATGACAAATATTCTGATGATAAATTTGTGCCAGCTGAAGGAGCATATGTAGGGTTAGTTTCCCCAAATGAAGCTAATTCTTGGCAACTAGAAAGCAAGGGTTACCAGTTCTGGACTAGACCCGATAAGGATGGTCGTTTCATGATTGACAACATACGAGCTGGTGGTTACAACTTATATGCCTGGGTTCCCGGATTCATAGGAGACTATGTACACAACAAGATCATCTCTATTACTCCAGGTTGTGAAATTGATATGGGTGAGATTGTATATGAACCACTACGTGATGGACCGACCTTGTGGGAGATTGGTATCCCTGATAAGACAGCTCGAGAATTTTACATCCCTGATCCCGATCCTTTGTATGCCAATAAACTCTATGTCAACCATCCTGACAGGTTTAGACAGTATGGACTTTGGGATAGATATACGGATTTATATCCTAACGAAGATCTTATATATACAGTTGGCGTCAATGATTACCGAAAGGACTGGTTCTTTGCTCAAGTTACCAGGAGAAAAGACAATGTGTACCAAGGTACTACATGGCAGATCAGGTTCAAACTTGACAATGTGGATGAAAACGGTGTCTATAAACTGCGGTTGGCACTTGCGACAGCAAATGCAGCTGAATTACAGGTTCGAGTAAATGATCCAAGTGAAGATCCTCCAATATTCACAACAGGACTAATAGGGAAAGAGAACGCGATTGCAAGACATGGGATTCACGGGCTCTACAGGCTTTATACCGCGAGTATAAAAGGCACAAAGCTAGTACAAGGCGATAACACCATCTTCTTGACTCAAGCAAGGGGTGGCAGCCCTTTTGTTGGGATCATGTATGACTACATTCGCCTTGAAGGACCTCCTGGTCCTGAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_274880.p1 GENE.R_Transcript_274880~~R_Transcript_274880.p1 ORF type:complete len:549 (+),score=78.80,CBM-like|PF14683.2|2.8e-55,Rhamnogal_lyase|PF06045.7|9.2e-49,fn3_3|PF14686.2|2.3e-28,fn3_3|PF14686.2|4.6e+03 R_Transcript_274880:359-2005(+)
MVEVSYTRTWDSSHEGKFLPLNIDTRYIVLRGSSGFYSYAIYEKLKDWPGFNLPQVRIVYTLNKDLFHYMVVADNRQRKMPLPDDRSPERCKILSPPEAVLLTNPIEDEFKGEVDDKYQYSCENKDLQVHGWICTDPPTGFWQITPSDEFRTGGPLKQNLTSHVGPYNLAMFISAHYLGEEMVSKFAEGEEWKKVLGPVFTYLNCVPKEVDWHWLWEDAKQQTLVETESWPYSFPASEDYLKSNQRGNLVGRLVVHDKYSDDKFVPAEGAYVGLVSPNEANSWQLESKGYQFWTRPDKDGRFMIDNIRAGGYNLYAWVPGFIGDYVHNKIISITPGCEIDMGEIVYEPLRDGPTLWEIGIPDKTAREFYIPDPDPLYANKLYVNHPDRFRQYGLWDRYTDLYPNEDLIYTVGVNDYRKDWFFAQVTRRKDNVYQGTTWQIRFKLDNVDENGVYKLRLALATANAAELQVRVNDPSEDPPIFTTGLIGKENAIARHGIHGLYRLYTASIKGTKLVQGDNTIFLTQARGGSPFVGIMYDYIRLEGPPGPE*

Click here to download the sequence:
Link to NCBI Protein BLAST