Transcript Information: R_Transcript_276300.p1


Annotated TAIR IDAT5G56310.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:22802322-22803914 | Forward length=530
E-Value7.1E-169
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.48215368559634
Replicate 20.19807830581413
Replicate 30.56186337499996
Condition 2: 8 Hour
Replicate 10.23099872591741
Replicate 20.46409377406234
Replicate 30.61646979465465
Condition 3: 24 Hour
Replicate 10.56311602633991
Replicate 20.33290956815966
Replicate 30.78465356424726


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_276300.p1 GENE.R_Transcript_276300~~R_Transcript_276300.p1 ORF type:complete len:530 (+),score=88.75,PPR_2|PF13041.2|0.00071,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|0.00064,PPR_2|PF13041.2|7.2e-09,PPR_2|PF13041.2|7.5e-05,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|29,PPR_2|PF13041.2|5.3e+02,PPR_2|PF13041.2|5.3e+02,PPR|PF01535.16|8.7e+03,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|0.4,PPR|PF01535.16|0.0017,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|4.5e+03,PPR|PF01535.16|7.5e-06,PPR|PF01535.16|5.2e-06,PPR|PF01535.16|2.9,PPR|PF01535.16|2.5,PPR|PF01535.16|11,PPR_3|PF13812.2|20,PPR_3|PF13812.2|0.75,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|7.7e+03,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.42,PPR_3|PF13812.2|2.7e+02,PPR_3|PF13812.2|5.6e+02,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|3.7,PPR_1|PF12854.3|8.3,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|0.0052,PPR_1|PF12854.3|3.1e+03,PPR_1|PF12854.3|0.088,PPR_1|PF12854.3|0.0019,PPR_1|PF12854.3|4.7e+02,PPR_1|PF12854.3|2.9,TPR_19|PF14559.2|9.7,TPR_19|PF14559.2|7.6e+02,TPR_19|PF14559.2|1.2e+02,TPR_19|PF14559.2|0.14 R_Transcript_276300:154-1743(+)
ATGGTTGGAAGATTTAGCCTAATATCAAATCTTAGGCACTGCTCTTCTTCCAAACACATACACCAACTTCATGGGTTTCTTCTCACTACAGGTCTTGTCAATGATAACTTCCTTCTCTCAAACTTCATTGAAGCCTGCTCTAGAACCAGCCTTTCCCGTTATGGTTGCTCTGTTTTCAAGCAAAAATTCCAACCCAGTATCTATCTTTACAATACTATGATCAAGTCTCTATCTTTAGACCATTCTTCAGCTAAAGAAGCCATCTTTCTCTTCAACAACATCAGGGTTTCTGGCCTTTCCCCTGATTCTTACTCCATCCCTTTCGCGCTGAAGGCGGTGACCCGACAATTGGATGTGAATTTAGGGAAACAGATTCATGGCGAGGCGATAAAAAGTGGGTTAGTGACGGAAATTCCTGTAGTGATTGCTCTTGTGCGAATGTACTCAGCAGGTCACCGGGTTGATGATGCACGTAAGGTGTTCGATGAAATGTCTAGTTCAAATGATGATGTCGCGTTGTGGAATGCAATGGTTGCTGGGTATGCTGGTGTAGGTGACATGAGTAATGCGAGGGCTTTGTTTGAGGTTATGTCTGAGAGAGATGTGATCTCTTGGACTACGATTGTTGCTGGTTATGTTCATGTGAATCGACCAAGTGAAGCGATTGAGATCTTTCGGAGAATGCAGGGTGATGGTGTGAAGCCTGACGAAGTTGCTTTGCTGTCTGCTCTTTCAGCTTGTGCTGATTTAGGTGCACTTGAGTTGGGGGAGTGGATACATGACTTCATTCATAAGCATGGCTTGCGTAAAACTGTCCCTTTATGCAATGCTCTTGTTGACATGTATGTAAAATCAGGGAGTATAGAAAAGGCCTTAGAGATATTCGAGAGTATGAAGCACAAGAATGTCGTATCTTGGACAACCATGATTGCAGGAATGGCCTTTCATGGGCTCGGAAAGGAAGCATTGGAGATGTTTTCTCATATGGAAAGAGCAGGAGCCAAGCCGAATGAGATCACCTTCATTGGTATCCTTTCTGCTTGTAGCCATGTTGGGTTAGTCGAATTAGGCTTGTCATATTTCGACTCTATGTACTCAGAATATGGCATCACACCAAAGATTCAGCACTATGGTTGTATAGTCGATTTGCTTGGCCGTGCTGGTTGTCTAAAAGAAGCTGAAGATCTAGTAGCAAGGAAGCTTTTTAATGGTAATGCAGCTATATGGGGGTCCTTACTTGCGGCTTCTAGAGTACATGGCAATTCCACACTTGCTACAAAAGCATTGAAGCATTTGTCAATTTTGGAGCCTAATAATAGTGGGAACTATGCTCTTCTTTCGAATACATATGCTGCTCTTGGACAATGGAATGAAGCTAGATTGGTAAGGAAAACAATGAGAAGCTCAGGTGTGAGTAAATTGCCAGGTCAAAGTAGTATTGAAGTAGACAATTGTATTCGCAGTTTCATCACTGGTAGTGTCTCTTGTCCCAAGGCAAATGAGATTTATGAAGCTCTTTGTGATATTAACTATCAATGTATGATGCACGGTAGTGAACAAATTATACCGGAGCAATTTTTCGTTAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_276300.p1 GENE.R_Transcript_276300~~R_Transcript_276300.p1 ORF type:complete len:530 (+),score=88.75,PPR_2|PF13041.2|0.00071,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|0.00064,PPR_2|PF13041.2|7.2e-09,PPR_2|PF13041.2|7.5e-05,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|29,PPR_2|PF13041.2|5.3e+02,PPR_2|PF13041.2|5.3e+02,PPR|PF01535.16|8.7e+03,PPR|PF01535.16|1.1e+02,PPR|PF01535.16|0.4,PPR|PF01535.16|0.0017,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|4.5e+03,PPR|PF01535.16|7.5e-06,PPR|PF01535.16|5.2e-06,PPR|PF01535.16|2.9,PPR|PF01535.16|2.5,PPR|PF01535.16|11,PPR_3|PF13812.2|20,PPR_3|PF13812.2|0.75,PPR_3|PF13812.2|2.5,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|7.7e+03,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.42,PPR_3|PF13812.2|2.7e+02,PPR_3|PF13812.2|5.6e+02,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|3.7,PPR_1|PF12854.3|8.3,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|0.18,PPR_1|PF12854.3|0.0052,PPR_1|PF12854.3|3.1e+03,PPR_1|PF12854.3|0.088,PPR_1|PF12854.3|0.0019,PPR_1|PF12854.3|4.7e+02,PPR_1|PF12854.3|2.9,TPR_19|PF14559.2|9.7,TPR_19|PF14559.2|7.6e+02,TPR_19|PF14559.2|1.2e+02,TPR_19|PF14559.2|0.14 R_Transcript_276300:154-1743(+)
MVGRFSLISNLRHCSSSKHIHQLHGFLLTTGLVNDNFLLSNFIEACSRTSLSRYGCSVFKQKFQPSIYLYNTMIKSLSLDHSSAKEAIFLFNNIRVSGLSPDSYSIPFALKAVTRQLDVNLGKQIHGEAIKSGLVTEIPVVIALVRMYSAGHRVDDARKVFDEMSSSNDDVALWNAMVAGYAGVGDMSNARALFEVMSERDVISWTTIVAGYVHVNRPSEAIEIFRRMQGDGVKPDEVALLSALSACADLGALELGEWIHDFIHKHGLRKTVPLCNALVDMYVKSGSIEKALEIFESMKHKNVVSWTTMIAGMAFHGLGKEALEMFSHMERAGAKPNEITFIGILSACSHVGLVELGLSYFDSMYSEYGITPKIQHYGCIVDLLGRAGCLKEAEDLVARKLFNGNAAIWGSLLAASRVHGNSTLATKALKHLSILEPNNSGNYALLSNTYAALGQWNEARLVRKTMRSSGVSKLPGQSSIEVDNCIRSFITGSVSCPKANEIYEALCDINYQCMMHGSEQIIPEQFFVN*

Click here to download the sequence:
Link to NCBI Protein BLAST