Transcript Information: R_Transcript_277117.p1


Annotated TAIR IDAT5G60710.1
Annotated Gene NameZinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:24410953-24414849 | Reverse length=704
E-Value7E-112
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2420959912883
Replicate 22.5129430419506
Replicate 33.2466242262263
Condition 2: 8 Hour
Replicate 12.9305917102215
Replicate 22.7466909978149
Replicate 34.1162707548594
Condition 3: 24 Hour
Replicate 11.1207748410375
Replicate 21.5282384113156
Replicate 31.5166283562575


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_277117.p1 GENE.R_Transcript_277117~~R_Transcript_277117.p1 ORF type:complete len:635 (+),score=136.16,VWA|PF00092.24|5.5e-28,VWA_2|PF13519.2|2.2e-23,VWA_2|PF13519.2|5.6e+03,VWA_3|PF13768.2|2.2e-22,VWA_3|PF13768.2|2.1e+03,zf-RING_11|PF17123.1|1.4e-10,zf-RING_11|PF17123.1|5.4e+03,zf-RING_11|PF17123.1|6.2e+03,VWA_CoxE|PF05762.10|9.1e-10,Vwaint|PF14624.2|1.1e-08,zf-RING_2|PF13639.2|3.6e-09,zf-RING_2|PF13639.2|1.6e+04,zf-C3HC4|PF00097.21|1.8e-05 R_Transcript_277117:1791-3695(+)
ATGATGCGGGAAACATGTGCAATATGCTTGGGAAGCATGAAAGCAGGGAATGGGAGAGCATTGTTCACAGCACAATGTTCACACATCTTCCACTTCAACTGCATTACTTCCAATGTTCAACATGGCAACCACATCTGCCCGATTTGCCGTTCAACTTGGACTGATCTCCCTTCACAAGTCTTGCCTGGTCCTCAATTCAACTATCAACAACCTTTTTTCAACCCTCCTAATTTCAACTTCAATGTTCAGCCAGCTCCATTATTCTCTTCACTACCGCCTATGTTCACAAACTCAGACGACTTTGCTGATGATGAGCCTCTTCCAACCCCAGTTTCGGAACCTGATCATGAAACATCATCCTTGTCTTCCTCAGCCCCGCCGCAGGGTGATAGCCTAAGTGTCAGGGCCTTGCCTGAGTATGCTGCACTGAGCAGATCAGAACTGTCTACATCATTCACTGTCCTTGTGGGAGTCCGTGCCCCTCCTCTGTCTCCGGAAGCTACAGACAGGCCTGGCATCCGTGCTCCTCTTGACTTGGTGGCTGTCCTTGATGTGAGTGGCAGTATGGATGGGGGCAAGATCAGGCTGCTTAAGCAGGCTGTCAACTTTGTTGTCGACAACCTTGGCCCAACAGATCGATTTTCTATCATCACATTCTCGACTTCTGCTCGGAGGGTGACACCACTGAGAAGGATGACAGACATGGGAAAAACTGAAATGGCTCAGGCTGTGAACTCCCTCAGGGCATCTGGCTCGACCAACATCATTGCAGGGTTGAAGAAAGCTGTTCAGGTCCTTGAGCAACGCAGGGAGAAGAACCCGGTTGCAAGCATTATTCTGCTATCCGATGGGCAAGATAACCAAAATGGTCATGGTCCTGCTGATTTTCTCCGTGCCCTCAACAGTCTCCCACCTTTCAGCCGGTCTAGGGACAGCACAAATCAGACTCACACCGAAGCTGTCCCTGTACATACATTTGGGTTCGGCTCTGATCATGATGCTGCAGCACTTCATGCTATAGCAGACAAATCGGGTGGGACTTTCTCCTACATTGAGTCAATTGATGTCATCCAAGATGCCTTTGCTCAATGTATTGCCGGGCTCATGAGTGTCGTGGCACAGGAAGTTGAGATTCGAGTTCAGTCAGGTTCCAATGGGGTCCAAATCCAGTCTATTGCTTCTGGAAGGTACAAAAACGCAGTTGACAATGATGCTCGAAAAGATGGTGTGATCTATATTGGAGATCTCTATGCAGAAGAGGAAAAGAAATTCTTAGTATACCTCTCAGTCCCGCGGGAAACTGATTCCTCAACAACAAAGCTTCTGGAGGTTATGTGCTCTCACAAGGACCCACTATTGAGTTGTACCCTTTTGTCTGAATCAAAAACAGTTGAGATCAGTCGCCCCTCGACAGAGGCCTTAACAGCATCAGACAGGCAAGTGTGCTTGGAGGTTGACAGAGAGAGAAACCGCATCTTGGCAGCAGAAGGGATAGCTCAGGCGCAGGCAATGGCAGAGAGAGGAGAACTACAAGATGCTCGATCTTTGCTTACTGACAGTAGACAAAGGATCTTATCCTCTACTGCAGCTCAAGCAGGGGATTCCCAGTGTGTGTGGCTCGAGAGTGAAGTCAGAGAAGTCCAAGACCGGATGTCAAGTAGGGCTCAGTACCAATCTGGAGGGAGAGCCTATGCACTCTCGAAAGGGAGCTCGCATATGTCTCAGAGAGCTTCAACTCAGGCCATACGGCTGCAAAGTCATCAACAACCACAAGGCTTTTCATTTGGTTCGAGCATGGCTGCTGCTCCTCCTGCAGGGGCGGGCTATCTGACCTCCTTTATGAGAAAAATGGTGACAAAATCACAGGAGCTCCGCAAATCTGGAGGTAGTGATGCTACAAGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_277117.p1 GENE.R_Transcript_277117~~R_Transcript_277117.p1 ORF type:complete len:635 (+),score=136.16,VWA|PF00092.24|5.5e-28,VWA_2|PF13519.2|2.2e-23,VWA_2|PF13519.2|5.6e+03,VWA_3|PF13768.2|2.2e-22,VWA_3|PF13768.2|2.1e+03,zf-RING_11|PF17123.1|1.4e-10,zf-RING_11|PF17123.1|5.4e+03,zf-RING_11|PF17123.1|6.2e+03,VWA_CoxE|PF05762.10|9.1e-10,Vwaint|PF14624.2|1.1e-08,zf-RING_2|PF13639.2|3.6e-09,zf-RING_2|PF13639.2|1.6e+04,zf-C3HC4|PF00097.21|1.8e-05 R_Transcript_277117:1791-3695(+)
MMRETCAICLGSMKAGNGRALFTAQCSHIFHFNCITSNVQHGNHICPICRSTWTDLPSQVLPGPQFNYQQPFFNPPNFNFNVQPAPLFSSLPPMFTNSDDFADDEPLPTPVSEPDHETSSLSSSAPPQGDSLSVRALPEYAALSRSELSTSFTVLVGVRAPPLSPEATDRPGIRAPLDLVAVLDVSGSMDGGKIRLLKQAVNFVVDNLGPTDRFSIITFSTSARRVTPLRRMTDMGKTEMAQAVNSLRASGSTNIIAGLKKAVQVLEQRREKNPVASIILLSDGQDNQNGHGPADFLRALNSLPPFSRSRDSTNQTHTEAVPVHTFGFGSDHDAAALHAIADKSGGTFSYIESIDVIQDAFAQCIAGLMSVVAQEVEIRVQSGSNGVQIQSIASGRYKNAVDNDARKDGVIYIGDLYAEEEKKFLVYLSVPRETDSSTTKLLEVMCSHKDPLLSCTLLSESKTVEISRPSTEALTASDRQVCLEVDRERNRILAAEGIAQAQAMAERGELQDARSLLTDSRQRILSSTAAQAGDSQCVWLESEVREVQDRMSSRAQYQSGGRAYALSKGSSHMSQRASTQAIRLQSHQQPQGFSFGSSMAAAPPAGAGYLTSFMRKMVTKSQELRKSGGSDATS*

Click here to download the sequence:
Link to NCBI Protein BLAST