Transcript Information: R_Transcript_27843.p1


Annotated TAIR IDAT5G27660.1
Annotated Gene NameTrypsin family protein with PDZ domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:9789835-9792235 | Reverse length=428
E-Value4.3E-181
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.454351770832
Replicate 27.6129772872028
Replicate 310.844991240673
Condition 2: 8 Hour
Replicate 110.574726894076
Replicate 212.032529951492
Replicate 312.618094218791
Condition 3: 24 Hour
Replicate 111.982596844021
Replicate 212.27555979822
Replicate 312.788889805508


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_27843.p1 GENE.R_Transcript_27843~~R_Transcript_27843.p1 ORF type:complete len:433 (+),score=94.71,Trypsin_2|PF13365.2|4.2e-33,Trypsin|PF00089.22|2.7e-16,PDZ_2|PF13180.2|2.3e+03,PDZ_2|PF13180.2|9.5e-11 R_Transcript_27843:342-1640(+)
ATGGCGCGTTTGCTGAAGAGATTTTCAGCCATTAACAAGAAACTGCTGCTGCGTGGAGTCGCGGTTGCAACAGCGGGTTCTGGGCTTTTGTATGCAACAACAAATGGGCCTGCTGGCCCAACTTCCAGACTACATGTGTCAATATCAATGTCGATGAAAGGTGAATCATCACACTTGCCGTGGCGAGTCCCGCTGTTGTCTGTAGACCCTATAACACCTGGAAATAAAGATAATTCCTATATGCTGCATTCCTCTAGAGTTGCACCTGGTCCAGCTGCTGATGCAAGTAACCAATCATCTGCTGATGGACCAAAAGATTGCTCGCATTGTTTTGGTCGAGATACCATAGCCAATGCAGCTGCCAAGGTTAGCCCAGCTGTAGTGAATCTGTCTGTACCACAGGGTTTCTATGGATTGACTATGGGGAAGAGTATAGGTTCGGGAACTATTATTGATCCAGATGGTACTATTTTGACATGTGCCCATGTAGTTGTTGACTTCCAGGGTATGAGAGCTTCATCTAAAGGGAAGGTTGAGGTGACATTGCAAGATGGACGGACATTTGAGGGTACAGTACTAAATGCTGATTCACATTCTGATATTGCTATTGTAAAGATAAAATCAAAACTACCACTACCTGCTGCGAAACTTGGCTCATCAAGTAAACTTCGTCCTGGGGAATGGGTAATAGCATTGGGCTGCCCGCTTTCCCTGCAAAATACTGTGACAGCTGGAATTGTAAGCTGTGTTGACCGAAAAAGTAGTGATCTGGGTCTTGGTGGTATGAGAAGGGAATATTTGCAGACTGATTGTGCCATTAATGCGGGAAATTCTGGAGGTCCTCTTGTTGACATGAATGGGGAGGTGGTTGGTGTCAATAACATGAAAGTGTTGATTGCTGATGGATTGAGCTTTGCTGTACCAATTGATTCAATCTCCAAAATTATCGAACATTTCAAGAGGAGAGGGAGAGTTGTTCGCCCTTGGCTGGGACTCAAAATGATTGATCTCAATGAATTGATACTAGCACAGCTTAAAGAGAGGGATCCAACATTTCCAAATGTTGACAGAGGTGTTCTTGTCCCCATGGTTACGCCAGGCTCCCCTGCAGATCGTGCTGGATTCCGTCCAGGAGATGTCGTCATTGAATTTGATGGAAAACCAGTTGGAAGCATAAAGGAGATCACCGACATAATGGATGACAAAGTAGGGAAGCCATTGAAGGTGGTTGTGAAGAGGGCTAACAATGCTGTTTTACACCTAACCGTGATCCCGGAGGAAGCAAATCCAGATATGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_27843.p1 GENE.R_Transcript_27843~~R_Transcript_27843.p1 ORF type:complete len:433 (+),score=94.71,Trypsin_2|PF13365.2|4.2e-33,Trypsin|PF00089.22|2.7e-16,PDZ_2|PF13180.2|2.3e+03,PDZ_2|PF13180.2|9.5e-11 R_Transcript_27843:342-1640(+)
MARLLKRFSAINKKLLLRGVAVATAGSGLLYATTNGPAGPTSRLHVSISMSMKGESSHLPWRVPLLSVDPITPGNKDNSYMLHSSRVAPGPAADASNQSSADGPKDCSHCFGRDTIANAAAKVSPAVVNLSVPQGFYGLTMGKSIGSGTIIDPDGTILTCAHVVVDFQGMRASSKGKVEVTLQDGRTFEGTVLNADSHSDIAIVKIKSKLPLPAAKLGSSSKLRPGEWVIALGCPLSLQNTVTAGIVSCVDRKSSDLGLGGMRREYLQTDCAINAGNSGGPLVDMNGEVVGVNNMKVLIADGLSFAVPIDSISKIIEHFKRRGRVVRPWLGLKMIDLNELILAQLKERDPTFPNVDRGVLVPMVTPGSPADRAGFRPGDVVIEFDGKPVGSIKEITDIMDDKVGKPLKVVVKRANNAVLHLTVIPEEANPDM*

Click here to download the sequence:
Link to NCBI Protein BLAST