Transcript Information: R_Transcript_278439.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.39508573495062
Replicate 20.09089307539523
Replicate 30.39665346486844
Condition 2: 8 Hour
Replicate 10.5299970767802
Replicate 20.48400177145423
Replicate 30.31431360381622
Condition 3: 24 Hour
Replicate 10.69569112811225
Replicate 20.09547731121462
Replicate 30.28425590502464


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_278439.p2 GENE.R_Transcript_278439~~R_Transcript_278439.p2 ORF type:complete len:231 (+),score=42.67,UBN2_3|PF14244.2|3.7e-34,Retrotrans_gag|PF03732.13|2.3e-08 R_Transcript_278439:2249-2941(+)
ATGACAGAAACACCTAAGACCATAGAACCCAGTGACCCTCTGTATCTTCATCCATCTGATGGACCAAACTCCCTCAAAGTCGATCCAATACTTACTGGACCTAACAACTTTAGACCCTGGAAAAGGCAGATGGAAATAGCTCTAGCCACTAAAAGAAAGCTTGGTTTTGTCACTAGTCTTATTGAAAGGCCAGCCACTGATAAGTTCAGGGAAGAAGCCTGGGAAACCTCTAACAGCATTGTTATTGCCTGGCTCTTAAATAATGTTAATGATAACATTAAGAAATCCATTATGTATATGGATACTGCAAGAAATATTTGGGTGAATCTGAGTATTAGGTTCACAGTGAGCAATGGCTCAAAAAAGTATAAACTGAACAAAGATACTTATGAGATTAGGCAGGATGGTAGGACAATCTCTGAGTACTATACAGAACTCAAAGGTGTGTGGGAAGAGCTAGAAGATATGAGTGACTATCCTGCTATAACCAATATTACCGAAGAGATAGCTGCTTTTGTAAGGGCTGTACGAAATGAGAAGGAAGAGCAGAGACTTTTCCAGTTTCTGAATGGATTGGACTCTAAATATGGACCTCTGAGGAGCAATATTCTTATCATGACTCCTTTACCTGAGGTGGAAGCAGCTATATCTATGATACAGCAGAGTCACAGGGTGATATGCTTGTTGATGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_278439.p2 GENE.R_Transcript_278439~~R_Transcript_278439.p2 ORF type:complete len:231 (+),score=42.67,UBN2_3|PF14244.2|3.7e-34,Retrotrans_gag|PF03732.13|2.3e-08 R_Transcript_278439:2249-2941(+)
MTETPKTIEPSDPLYLHPSDGPNSLKVDPILTGPNNFRPWKRQMEIALATKRKLGFVTSLIERPATDKFREEAWETSNSIVIAWLLNNVNDNIKKSIMYMDTARNIWVNLSIRFTVSNGSKKYKLNKDTYEIRQDGRTISEYYTELKGVWEELEDMSDYPAITNITEEIAAFVRAVRNEKEEQRLFQFLNGLDSKYGPLRSNILIMTPLPEVEAAISMIQQSHRVICLLM*

Click here to download the sequence:
Link to NCBI Protein BLAST