Transcript Information: R_Transcript_278440.p2


Annotated TAIR IDAT3G20980.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7355963-7357966 | Forward length=405
E-Value0.0006
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.42558717251935
Replicate 20
Replicate 30.17803163934833
Condition 2: 8 Hour
Replicate 10.38060929969811
Replicate 20.057929745702553
Replicate 30.28214938788166
Condition 3: 24 Hour
Replicate 10.17842855358319
Replicate 20.17141392920138
Replicate 30.28351949076292


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_278440.p2 GENE.R_Transcript_278440~~R_Transcript_278440.p2 ORF type:complete len:386 (+),score=74.19 R_Transcript_278440:2926-4083(+)
ATGCTTGTTGATGTAAAAAAAGAGGTAGAAGGTTCTGCTCTATACAGTAGAGAGGTGAATACTACTGTTGTTTGTGAAGCATGTGGTCTCAAGGGACACCCCAAGGAGAAGTGTTGGACTGTGATTGGTTATCCACCATGGCATGCTAAAGGCAAAAAGGGTCCATTTGGACAAAGAGGATATGGTGCAAGGTCTTCAAGTTATAACAGAGGGAACTGGAATGGTCAAGGTAAGATAAGAAGTTCACCCAAGATTAACCCTCCTTCACCAAAAAGATTTGCTGGAAATGCACTACAACAGCCTGAAGATTTGAATGCTGTTGTTGCCATGTTAACCAATCTTCTCAAGTCAGTACCAAGTTCAAGTGGCAGCCAAAGACAAGGGAATGAAACTGACGAGGAGATGGACACTCAGTTTGCAGGTATGGCCTTTTGTCATAGTGTGGAAACAACTAATGATGACTGGATTATTGATACAGGGGCATCAGATCACATGGTTGCTGATTTGAACAAGTTAAGCAATGTAAAACCTATAAGAGTAAGATCTAAAATAAATTTGCCAAATGGAGGTATTGCCTGTGTCACTCATATTGGTGATGCAAAGTTAGAGAATGGGATGACTTTGAAAAATGTTTTATATGTTCTAGAATTTAAACAGAACCTGTTGTCTGTTCATAAGCTATTGATTGATGAAAACTGTCAAGTTTTGTTTAATAGAACTGACTGTATTATGCAGGATTGCACAACAAAGAGCATTAAAGGAATAGGAAGGGCAGCAGGTGGTCTCTACTATCTTACAAGCCAATCTAAGAAGAAGACAAACCTAGAATTCACTTTTGTTAAACCTAAGGCCAAAGTCACTTGTTTGACAACCAGTAGTTTTGATTCATCACCTGAGATTTGTAAAGACCTGAGTTTGGCTTGTAATAAACATGAATCAATGAAATCCAAAGTTTCTGAATATACCATTTGGCACAACAGATTGGGCCATGCACCCATTAGTAAATTGAAATTCATCCCTTGCATTAAACCATCTATAAAATCCTACAAGGATGTTATATGTTTGTCTTGTCCTATGGCCAAACACACAAAGCTTCCTTTTCTTCACAGGGAGACCACTGCTGCCTCACCATTTGCTCTTGTGCATATAGACATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_278440.p2 GENE.R_Transcript_278440~~R_Transcript_278440.p2 ORF type:complete len:386 (+),score=74.19 R_Transcript_278440:2926-4083(+)
MLVDVKKEVEGSALYSREVNTTVVCEACGLKGHPKEKCWTVIGYPPWHAKGKKGPFGQRGYGARSSSYNRGNWNGQGKIRSSPKINPPSPKRFAGNALQQPEDLNAVVAMLTNLLKSVPSSSGSQRQGNETDEEMDTQFAGMAFCHSVETTNDDWIIDTGASDHMVADLNKLSNVKPIRVRSKINLPNGGIACVTHIGDAKLENGMTLKNVLYVLEFKQNLLSVHKLLIDENCQVLFNRTDCIMQDCTTKSIKGIGRAAGGLYYLTSQSKKKTNLEFTFVKPKAKVTCLTTSSFDSSPEICKDLSLACNKHESMKSKVSEYTIWHNRLGHAPISKLKFIPCIKPSIKSYKDVICLSCPMAKHTKLPFLHRETTAASPFALVHIDI*

Click here to download the sequence:
Link to NCBI Protein BLAST