Transcript Information: R_Transcript_278441.p2


Annotated TAIR IDAT3G20980.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7355963-7357966 | Forward length=405
E-Value4E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.73378737506407
Replicate 20.84407237854465
Replicate 30.80576463906064
Condition 2: 8 Hour
Replicate 10.30761136868398
Replicate 20.50564808183585
Replicate 30.63849886604376
Condition 3: 24 Hour
Replicate 10.57682932732925
Replicate 20.44332178674527
Replicate 30.98989619186973


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_278441.p2 GENE.R_Transcript_278441~~R_Transcript_278441.p2 ORF type:complete len:398 (+),score=42.06,rve|PF00665.22|6.2e-23,gag_pre-integrs|PF13976.2|6.7e-07 R_Transcript_278441:1086-2279(+)
ATGCTCACTAATCTGCTTAAGGCAGTCCCTACATCTTCCAACAGTCAGAAGCAAGGAAATGATACTGATGAGGAACTGGACTCTCAGTTTGCAGGTATGGCCTTTTGTCATAGTCTGCAAACCAGTAATGATAACTGGATCATTGATTCGGGTGCATCAGATCATATTGTGGCAGATTTAAAAATGTTAAGTAATGTGAAACCTATGAGAGTCAATTCGAAGATAAATCTGCCAAATGGAGGTATAGCATGTGTAACTCATATTGGTGATGCAAAGCTGGAAAATGGGATGATTTTAAAGAATGTCGTTTATGTTCCTCGGTTTAAACAAAATCTATTATCTGTATATAAGTTATTAGTTGATCAAAATTGTCAAGTGCTGTTTAACAGAACTGATTGCATAATGCAAGATTGCACAACCAAGAGCATTAAAGCAATCGGAAGGGCAGCAAGTGGTCTCTACTACCTAACTAATCAGCCAGAAAAGAAGACTTTATCCACTTTTTCTTCCGTTTTGCCTAAGACTAAAGTCACTTGTTTGACTGCCAACAATTTAAACTCTGTTTCCAATGAATGTAATACATTGAGTATGGGATGTAATGTTCAAACTTCAATGAAATCTAAAGTTTCTGAGTACTCTCTTTGGCACAATAGGTTGGGTCATGCACCCTTGAGTAAATTGAAATATTTACCTTGTGTCAAACCTTCATTGAAGACACATAAAGAAACCATTTGTTTGTCTTGTCCAATGGCTAAATACACGAAACTCCCTTTTTCTCACAGAGAGACCACTGTTGCCACTCCATTTGCTCTTGTGCATATAGATATTTGGGGACCTTACAGAGTTGCATATAAAGGAAAGTTTAAGTACTTTCTCACTATTGTTGATGATTACTCTAGAGCCACATGGGTTTATCTATTACAACACAAGTCAGACTCCTATGAGACTTTAAAGGAGTTTTATTTGTATGCAAGAACCCAATTTAACAAACAAATAAAGATCATTAGATTTGATCAAGCTCTGGAATTTGATGATAGAGATTGCAGAAAATTCTTTAGTGATCATGGAATTGTACATCAGACAAGCTGTGTGGATAGACCACAGCAGAATGGAATTGTTGAAAGAAAACATAGGCACTTACTTGAAGTTAGTAGGGCCTTAAGGTTTCAGGCTGGACTTCCATTGAGTTATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_278441.p2 GENE.R_Transcript_278441~~R_Transcript_278441.p2 ORF type:complete len:398 (+),score=42.06,rve|PF00665.22|6.2e-23,gag_pre-integrs|PF13976.2|6.7e-07 R_Transcript_278441:1086-2279(+)
MLTNLLKAVPTSSNSQKQGNDTDEELDSQFAGMAFCHSLQTSNDNWIIDSGASDHIVADLKMLSNVKPMRVNSKINLPNGGIACVTHIGDAKLENGMILKNVVYVPRFKQNLLSVYKLLVDQNCQVLFNRTDCIMQDCTTKSIKAIGRAASGLYYLTNQPEKKTLSTFSSVLPKTKVTCLTANNLNSVSNECNTLSMGCNVQTSMKSKVSEYSLWHNRLGHAPLSKLKYLPCVKPSLKTHKETICLSCPMAKYTKLPFSHRETTVATPFALVHIDIWGPYRVAYKGKFKYFLTIVDDYSRATWVYLLQHKSDSYETLKEFYLYARTQFNKQIKIIRFDQALEFDDRDCRKFFSDHGIVHQTSCVDRPQQNGIVERKHRHLLEVSRALRFQAGLPLSY*

Click here to download the sequence:
Link to NCBI Protein BLAST