Transcript Information: R_Transcript_278848.p1


Annotated TAIR IDAT5G66500.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:26548076-26549674 | Reverse length=532
E-Value2.5E-161
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.12250309365583
Replicate 20
Replicate 30.20498199191188
Condition 2: 8 Hour
Replicate 10.10955644271698
Replicate 20.25012172081863
Replicate 30
Condition 3: 24 Hour
Replicate 10.15407924313895
Replicate 20.19736249566512
Replicate 30.19586312918924


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_278848.p1 GENE.R_Transcript_278848~~R_Transcript_278848.p1 ORF type:5prime_partial len:447 (+),score=79.30,PPR|PF01535.16|0.00035,PPR|PF01535.16|4e-06,PPR|PF01535.16|1.7,PPR|PF01535.16|0.024,PPR|PF01535.16|5.5e+03,PPR|PF01535.16|0.0014,PPR|PF01535.16|1.7e-07,PPR|PF01535.16|4.1,PPR|PF01535.16|0.0027,PPR|PF01535.16|89,PPR|PF01535.16|6.6,PPR_2|PF13041.2|0.07,PPR_2|PF13041.2|3.6e-09,PPR_2|PF13041.2|2,PPR_2|PF13041.2|0.0098,PPR_2|PF13041.2|0.018,PPR_2|PF13041.2|7.9e-08,PPR_2|PF13041.2|1.2e-07,PPR_2|PF13041.2|80,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|0.0042,PPR_3|PF13812.2|7.4e+03,PPR_3|PF13812.2|1.9e+03,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|1.9e+03,PPR_3|PF13812.2|6.5,PPR_3|PF13812.2|1.9,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|8.2e+02,PPR_1|PF12854.3|0.088,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|29,PPR_1|PF12854.3|9.9,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|38 R_Transcript_278848:2-1342(+)
TTAACTAATTCAAGACGAGGTATTCAAGTTCATGCCCTTATGATCAAAGCAGGTTCAGATATCGAAACTGTCCCAAAAACTGCTCTTATGGACATGTATTCCAAGTATGGTTTAGTGGATGAGTCGGTTCGAGTGTTTGACGAGATGGGATCTAAGGATGTGGTCACTTGGAATGCTTTTCTTTCAAATTTCCTGCGAAATGGTAAGCTTAGGAAAGCACTGGATGTGTTCGGGAAGATGATGAAGGAAAGGGTTATATTTACTGAGTTTACTATCTGTTCTTTGCTTAAAGTTTGCTCCTTGTTGAAGGCGATGAGGCAGGGTATGCAAGTTCATGGCTTGGTTGTGACTATGGGCCGTGATAAGGTGGTTTTGGCGACTGCCCTTATTGACTTTTACTCAGATGTTGGACTGATTGACAAAGCTATGAAGATTTATTGGAGTTTAGATTGCCGAAAAGATAATGTTCTTCACAATTCCTTCATTGCTGCGTGTGTTAAGAATCAGAAGTATAAGGAAGCATTCTTGTTGATGAGTAGAATGAAGCCTAATATTGTGGCCTTAACTAGTGCTTTGACAGCTTGCTCCAAGAAATCAGATCTGCGGACCGGGAAGCAGATACATGGCGTGGCTATTCGAATTTGGCTGACAGATGATACTCAGTTGAGTAACGCTTTGCTAGACATGTACTCGAAATGTGGGAAGGTCTCATTGGCCCTTTCAGTTTTTGATGGAATGCCTCACAGAGATGTGGTCTCTTGGACTAGCATGATAGATTCATATGGAAGCCATGGTAAAGGGTATGAAGCAGTTGAGCTTTTTACCAAAATGGAAGAAGATGTGAGCAGTGTAATGCCCAATGATGTGACTCTCCTCGCAGTTCTGTCTGCCTGCTCTCATTCAGGATTAGTTGATAGAGGCCGAGAATGTTTTAGTTCTATTGAGGGGAAATACGGTTTGTTTCCAAACTCATCTCACTATGCTTGCTTTATCGACATCTTAGGACGAGCAGGGCATATCAATGAAGTTTGGTGTTTGTATGATGAGATGATTAAGAAAGGCATTAAGCCCACAGCTGCAGTGTGGGCAGCATTGCTTAATGCTTGTGGACAGAACAATGATGTCTCAAGGGGCGAGTTTGCTGCAAAACAGCTTTCTGACTTGGAGCCTGATAAGCCTGGGATTTATGTTTTAGTATCAAATTTCTACGCAGCTATTGGGAAGTGGGATATTGTTGACCAACTAAGGCTCGAAATGAAGAAGAAGGGCTGTTTAAGGATGCCGGAAGTAGCTGGTATACCACGTTTGGTGTCTCTGAATATGTTACAGAAAAGTCTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_278848.p1 GENE.R_Transcript_278848~~R_Transcript_278848.p1 ORF type:5prime_partial len:447 (+),score=79.30,PPR|PF01535.16|0.00035,PPR|PF01535.16|4e-06,PPR|PF01535.16|1.7,PPR|PF01535.16|0.024,PPR|PF01535.16|5.5e+03,PPR|PF01535.16|0.0014,PPR|PF01535.16|1.7e-07,PPR|PF01535.16|4.1,PPR|PF01535.16|0.0027,PPR|PF01535.16|89,PPR|PF01535.16|6.6,PPR_2|PF13041.2|0.07,PPR_2|PF13041.2|3.6e-09,PPR_2|PF13041.2|2,PPR_2|PF13041.2|0.0098,PPR_2|PF13041.2|0.018,PPR_2|PF13041.2|7.9e-08,PPR_2|PF13041.2|1.2e-07,PPR_2|PF13041.2|80,PPR_3|PF13812.2|2.6,PPR_3|PF13812.2|0.0042,PPR_3|PF13812.2|7.4e+03,PPR_3|PF13812.2|1.9e+03,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|1.9e+03,PPR_3|PF13812.2|6.5,PPR_3|PF13812.2|1.9,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.0019,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|8.2e+02,PPR_1|PF12854.3|0.088,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|29,PPR_1|PF12854.3|9.9,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|0.00031,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|38 R_Transcript_278848:2-1342(+)
LTNSRRGIQVHALMIKAGSDIETVPKTALMDMYSKYGLVDESVRVFDEMGSKDVVTWNAFLSNFLRNGKLRKALDVFGKMMKERVIFTEFTICSLLKVCSLLKAMRQGMQVHGLVVTMGRDKVVLATALIDFYSDVGLIDKAMKIYWSLDCRKDNVLHNSFIAACVKNQKYKEAFLLMSRMKPNIVALTSALTACSKKSDLRTGKQIHGVAIRIWLTDDTQLSNALLDMYSKCGKVSLALSVFDGMPHRDVVSWTSMIDSYGSHGKGYEAVELFTKMEEDVSSVMPNDVTLLAVLSACSHSGLVDRGRECFSSIEGKYGLFPNSSHYACFIDILGRAGHINEVWCLYDEMIKKGIKPTAAVWAALLNACGQNNDVSRGEFAAKQLSDLEPDKPGIYVLVSNFYAAIGKWDIVDQLRLEMKKKGCLRMPEVAGIPRLVSLNMLQKSL*

Click here to download the sequence:
Link to NCBI Protein BLAST