Transcript Information: R_Transcript_27931.p1


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeHomolog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value1E-43
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.67106474098231
Replicate 20.54034596659591
Replicate 31.1790232586255
Condition 2: 8 Hour
Replicate 10.1800431246121
Replicate 20.32883649766449
Replicate 30.46713703802466
Condition 3: 24 Hour
Replicate 10.08440370304303
Replicate 20.48651306376273
Replicate 30.40234751262679


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_27931.p1 GENE.R_Transcript_27931~~R_Transcript_27931.p1 ORF type:5prime_partial len:272 (+),score=63.87,Syntaxin_2|PF14523.2|8.2e-28,Syntaxin_2|PF14523.2|1e+03 R_Transcript_27931:3-818(+)
TGCATGATGATGAAGTTGAAAGGTTTCCTTGGTGGCAGAGAGACAACTTCTTCAGAGTCTCAAACTCAGAAGCAGAGCTCCTCCCAAGGCGTGGCAGCTGGTGTTTTCCAGATCAACACCGCTGTCGCCACCTTCGCCCACATTGTCGACTCCATCGGCACCGCCAAAGACACCCCCAACCTCCGTGAAAAACTGCACAAAACAAGGCTGCATATAGTGGAGTTGGTGAAGGATACTTCTGCTAAGCTCAAGATCCTTAATGAATCTGACAATGATGCTCCTGCAAACCAAAGAGTTGCAAATGCTAAGCTTGCTAAAGATTTCCATGCAATATTACGGCAATTCCAGAAGCTTCAAAGTCGTGCCACTGAGCTAGAAACTACTGTGGCAACAACGTCTTCTGACAAACAGGATTTGGAAAGTCAACCTTTCTTGTCAGAGGAAAAGAGGCAAGAGTTGCCACTTTCTGATAACGAAGTTTCAGTCAATGAATCTACCGATGAGGAGAAGGTTGTCAAGGACATACAGGAGGGATTTGAAAATCTTCGTGTGATCTTCGAGGACCTAGCTTTTCTTGCACAGGAGCAGGGTCTCACAATCGACGATATTTTTTCCGACAATCAGGCTTCCAGCTCTACTGCAGCTACAAACGAAGCCCAACAACAGATTTCCAAAGCTTCTGGGACTGAAAAAGCAGGTTTCAAATGGGTAAGTTATGAGGCTTCTAAGACTTCACTTATATTGAGTTCTCATGTAAACGTCAAAAATCCAAGCTCTTGTTGTGGTTCCCCTCATTACTGCCAGTCTCTTCTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_27931.p1 GENE.R_Transcript_27931~~R_Transcript_27931.p1 ORF type:5prime_partial len:272 (+),score=63.87,Syntaxin_2|PF14523.2|8.2e-28,Syntaxin_2|PF14523.2|1e+03 R_Transcript_27931:3-818(+)
CMMMKLKGFLGGRETTSSESQTQKQSSSQGVAAGVFQINTAVATFAHIVDSIGTAKDTPNLREKLHKTRLHIVELVKDTSAKLKILNESDNDAPANQRVANAKLAKDFHAILRQFQKLQSRATELETTVATTSSDKQDLESQPFLSEEKRQELPLSDNEVSVNESTDEEKVVKDIQEGFENLRVIFEDLAFLAQEQGLTIDDIFSDNQASSSTAATNEAQQQISKASGTEKAGFKWVSYEASKTSLILSSHVNVKNPSSCCGSPHYCQSLL*

Click here to download the sequence:
Link to NCBI Protein BLAST