Transcript Information: R_Transcript_27933.p1


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeHomolog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value4E-68
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.582252109353
Replicate 224.495683819014
Replicate 328.16680326638
Condition 2: 8 Hour
Replicate 117.502859017846
Replicate 223.520334973692
Replicate 325.546711243508
Condition 3: 24 Hour
Replicate 128.484686745485
Replicate 226.139566092536
Replicate 325.130327603475


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_27933.p1 GENE.R_Transcript_27933~~R_Transcript_27933.p1 ORF type:complete len:270 (+),score=59.92,Syntaxin_2|PF14523.2|4.9e-30,Syntaxin_2|PF14523.2|1.3e+02,SNARE|PF05739.15|1.6e-12 R_Transcript_27933:261-1070(+)
ATGAGTTTCCAAGATCTGCGTAATGGCGGAAGGCCAGCAACAAGGTCAGCAGCAGCACCTCAAACGCCCTCACAGACCGTCGCCGCCGGAATTTTCCAGATCAACACCGCCGTCGGCAGTTTCCGCCGCCTTGTCGATTCAATCGGCACCGCCAAAGACACCCCCGACCACCGCCGAAAATTGCACAATACAAGGCAGCGTATAGTGGAGCTGGTCAAGGAGACTGGGGCGAAACTCAAAAGCCTCACTGATTCTGATATTGCTCATGCTGCTGATGTTTCTCAAAACAAAAAAATTGAAGATGCTAAGCTTGCTAGAGATTTTAAAGCAACTTTACAAGAGTTCCAGAAGGTCCAACAGCTTGCCTCTGAGCGTGAATCTACTTACATGCCATCTGGGTCTCTACCTACTGCTGCAACAACCTCTTCCGGTGAAGAGGCAAAACAGGATCTCGAGGGCCAACCTTTCCTGTTAGAGCAAAAGAGGCAAGAGTTGGTGCTTTTGGATAATGAAATTTCATTCAATGAAGCCGTAATTGAGGAGAGGGACCAGGGTATCAAGGACATACAAGAGCAAATTGGTCAAGTTAATGACATATTCAAGGACCTTGCTGTTCTTGTACATGAACAGAGTGTAGTGATTGATGATATTAATTCCAACATTGAGAATTCTGCTGCTGCAACAACCCAAGCGAGACAACAGATATCTAAGGCTTCTAAGAGTGAAAGAGCAGGTTCAACATGGTGTTGGATGTTGCTGGTGGTGTTTATTATCGCTATTCTCATCTTCGTGCTTATTCTAATCCTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_27933.p1 GENE.R_Transcript_27933~~R_Transcript_27933.p1 ORF type:complete len:270 (+),score=59.92,Syntaxin_2|PF14523.2|4.9e-30,Syntaxin_2|PF14523.2|1.3e+02,SNARE|PF05739.15|1.6e-12 R_Transcript_27933:261-1070(+)
MSFQDLRNGGRPATRSAAAPQTPSQTVAAGIFQINTAVGSFRRLVDSIGTAKDTPDHRRKLHNTRQRIVELVKETGAKLKSLTDSDIAHAADVSQNKKIEDAKLARDFKATLQEFQKVQQLASERESTYMPSGSLPTAATTSSGEEAKQDLEGQPFLLEQKRQELVLLDNEISFNEAVIEERDQGIKDIQEQIGQVNDIFKDLAVLVHEQSVVIDDINSNIENSAAATTQARQQISKASKSERAGSTWCWMLLVVFIIAILIFVLILIL*

Click here to download the sequence:
Link to NCBI Protein BLAST