Transcript Information: R_Transcript_27936.p1


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeHomolog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value4E-59
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1656055370005
Replicate 21.5124453689706
Replicate 31.9412489488265
Condition 2: 8 Hour
Replicate 11.3487976453991
Replicate 21.8002404872141
Replicate 31.8459265037682
Condition 3: 24 Hour
Replicate 12.5292499488149
Replicate 21.7756352496651
Replicate 33.2460578984805


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_27936.p1 GENE.R_Transcript_27936~~R_Transcript_27936.p1 ORF type:complete len:236 (+),score=55.14,Syntaxin_2|PF14523.2|3.6e-30,Syntaxin_2|PF14523.2|5.1e+02,Syntaxin|PF00804.21|6e-05 R_Transcript_27936:261-968(+)
ATGAGTTTCCAAGATCTGCGTAATGGCGGAAGGCCAGCAACAAGGTCAGCAGCAGCACCTCAAACGCCCTCACAGACCGTCGCCGCCGGAATTTTCCAGATCAACACCGCCGTCGGCAGTTTCCGCCGCCTTGTCGATTCAATCGGCACCGCCAAAGACACCCCCGACCACCGCCGAAAATTGCACAATACAAGGCAGCGTATAGTGGAGCTGGTGAAGGAGACTGGGGCAAAACTCAAAAGCCTTACTGATTCTGATATTGCTCATGCTGCTGATGTTTCTCAAAACAAAAAAATTGAAGATGCTAAGCTTGCTAGAGATTTTAAAGCAACTTTACAAGAGTTCCAGAAGGTCCAACAGCTTGCCTCTGAGCGTGAATCTACTTACATGCCATCTGGGTCTCTACCTACTGCTGCAACAACCTCTTCCGGTGAAGAGGCAAAACAGGATCTCGAGGGCCAACCTTTCCTGTTAGAGCAAAAGAGGCAAGAGTTGGTGCTTTTGGATAATGAAATTTCATTCAATGAAGCCGTAATTGAGGAGAGGGACCAGGGTATCAAGGACATACAAGAGCAAATTGGTCAAGTTAATGACATATTCAAGGACCTTGCTGTTCTTGTACATGAACAGAGTGTAGTGATTGGTGAGATGCTGCTTGCCTGTTCAACCTATTTTGCCGTGTACTATCCAAGCACTTCATTGTCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_27936.p1 GENE.R_Transcript_27936~~R_Transcript_27936.p1 ORF type:complete len:236 (+),score=55.14,Syntaxin_2|PF14523.2|3.6e-30,Syntaxin_2|PF14523.2|5.1e+02,Syntaxin|PF00804.21|6e-05 R_Transcript_27936:261-968(+)
MSFQDLRNGGRPATRSAAAPQTPSQTVAAGIFQINTAVGSFRRLVDSIGTAKDTPDHRRKLHNTRQRIVELVKETGAKLKSLTDSDIAHAADVSQNKKIEDAKLARDFKATLQEFQKVQQLASERESTYMPSGSLPTAATTSSGEEAKQDLEGQPFLLEQKRQELVLLDNEISFNEAVIEERDQGIKDIQEQIGQVNDIFKDLAVLVHEQSVVIGEMLLACSTYFAVYYPSTSLS*

Click here to download the sequence:
Link to NCBI Protein BLAST