Transcript Information: R_Transcript_27942.p1


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeHomolog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value6E-43
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1779101139153
Replicate 22.7438347134935
Replicate 30.9110634271197
Condition 2: 8 Hour
Replicate 12.6433604204412
Replicate 22.1598579051145
Replicate 33.094024537566
Condition 3: 24 Hour
Replicate 12.0870733843367
Replicate 22.1303375064762
Replicate 31.4923435013794


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_27942.p1 GENE.R_Transcript_27942~~R_Transcript_27942.p1 ORF type:3prime_partial len:176 (+),score=51.16,Syntaxin_2|PF14523.2|2.9e-09,Syntaxin_2|PF14523.2|74 R_Transcript_27942:243-767(+)
ATGCATTCATTAAGCATGCCCTATAAACAAGTTGTTTCAGAATTGTCATTGTGTGTTGTCCAGCAAAACAAAAAAATTGAAGATGCTAAGCTTGCTAGAGATTTTAAAGCAACTTTACAAGAGTTCCAGAAGGTCCAACAGCTTGCCTCTGAGCGTGAATCTACTTACATGCCATCTGGGTCTCTACCTACTGCTGCAACAACCTCTTCCGGTGAAGAGGCAAAACAGGATCTCGAGGGCCAACCTTTCCTGTTAGAGCAAAAGAGGCAAGAGTTGGTGCTTTTGGATAATGAAATTTCATTCAATGAAGCCGTAATTGAGGAGAGGGACCAGGGTATCAAGGACATACAAGAGCAAATTGGTCAAGTTAATGACATATTCAAGGACCTTGCTGTTCTTGTACATGAACAGAGTGTAGTGATTGATGATATTAATTCCAACATTGAGAATTCTGCTGCTGCAACAACCCAAGCGAGACAACAGATATCTAAGGCTTCTAAGAGTGAAAGAGCAGGTTCAACATGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_27942.p1 GENE.R_Transcript_27942~~R_Transcript_27942.p1 ORF type:3prime_partial len:176 (+),score=51.16,Syntaxin_2|PF14523.2|2.9e-09,Syntaxin_2|PF14523.2|74 R_Transcript_27942:243-767(+)
MHSLSMPYKQVVSELSLCVVQQNKKIEDAKLARDFKATLQEFQKVQQLASERESTYMPSGSLPTAATTSSGEEAKQDLEGQPFLLEQKRQELVLLDNEISFNEAVIEERDQGIKDIQEQIGQVNDIFKDLAVLVHEQSVVIDDINSNIENSAAATTQARQQISKASKSERAGSTW

Click here to download the sequence:
Link to NCBI Protein BLAST