Transcript Information: R_Transcript_279532.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.38528677476979
Replicate 20.11079841908337
Replicate 30.42307958620862
Condition 2: 8 Hour
Replicate 10.064606503818589
Replicate 20.23599875294127
Replicate 30.095786863432121
Condition 3: 24 Hour
Replicate 10.30287344627578
Replicate 20.52373965703218
Replicate 30.40425839791103


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_279532.p1 GENE.R_Transcript_279532~~R_Transcript_279532.p1 ORF type:3prime_partial len:379 (+),score=82.32,UBN2_3|PF14244.2|4.7e-43,Retrotrans_gag|PF03732.13|3.5e-10 R_Transcript_279532:338-1471(+)
ATGCTTGCCACACAAAAAATGAATGGAGATAATTTTCCTGAATGGAGGCGTTTAGCTGAAATTGCTTTGAGTGCGAAGAACAAGTTAGGCTTTGTTCAAGGTACTTGTCCTAAACCTTCTGTTGGATCTTCTCTTTTGCCACATTGGGAGAGATGCAATAATCTTGTCATAACCTGGATTTTACATTCTGTTGATCCTGAAATTGGACGAAGCATTTTGTATTATAATACTGCCTCAGAGATTTGGAATGAACTTGCTGATCGATATGGTCAGTCCAATGCTCCAAGAAAGTACCAAGCACATAAGCATATAAGTGAGATTGAACAAGCAAATAAGTCTGTCACTGAATATTATACTGCCTTGAAAACTTCTTGGGATGAATATTTGTCTCTAATTACTATCCCTACATGTACCTGTGGTGCTGGTAATGTGTTCTTGGGAATTCTTCTTGAACAACAAGTCTTGCAGTTTCTTTTGGGTCTTAATGATGACTATGTGCATACCAGAGGAAACATACTGATGATGCAACCCCTGCCTAATCTTAGCCAGGCTTACAGATATGTTTTTCAAGAAGAGAAACAAAGACAGTGTGGTAACTTTGTTACTCTAGGTTCTGATTCTATTGCTTTAGCAGCTCAGAAATCTTCTCCTAAATGGCCTAAGCATGGTAATTTTGGTTCTAGGAAAGAGAATTTTGCACCAACTCATGCACAGCATTACAATCAGGGTCTTATTCCTCCATTTAATTCCTCCAGACCAGTGTATGGTGTTTCTCCTACTGGGAGAAGATCAAAGAATTATTGTACTCATTGCAAAGTTTATGGACATAGCATTGAGAGATGTTATAAACTGCATGGATTTCCTCAGGACAAAGGGAAAAAATTAGCTAATTGTGCTCAAGGTGATTCAGTTCTTGATATTTCTGAGAATGACATTGGTTCTGGTTCTTCTGCTCATACTTTAACTCAGGAACAGATTCAACATTTGGTGTCTCTTGTGTCTCAACATCATCTGACACCTTCTACTTCTTCTGGTCCTTCTTTTACTCATGATCAGTCTGCTAATTCAGTTTTCTTGGCAGGTAAAGCACTTTGTCTTCTTTCTTCTAGTGTCAATCACAAATGGATCATTGAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_279532.p1 GENE.R_Transcript_279532~~R_Transcript_279532.p1 ORF type:3prime_partial len:379 (+),score=82.32,UBN2_3|PF14244.2|4.7e-43,Retrotrans_gag|PF03732.13|3.5e-10 R_Transcript_279532:338-1471(+)
MLATQKMNGDNFPEWRRLAEIALSAKNKLGFVQGTCPKPSVGSSLLPHWERCNNLVITWILHSVDPEIGRSILYYNTASEIWNELADRYGQSNAPRKYQAHKHISEIEQANKSVTEYYTALKTSWDEYLSLITIPTCTCGAGNVFLGILLEQQVLQFLLGLNDDYVHTRGNILMMQPLPNLSQAYRYVFQEEKQRQCGNFVTLGSDSIALAAQKSSPKWPKHGNFGSRKENFAPTHAQHYNQGLIPPFNSSRPVYGVSPTGRRSKNYCTHCKVYGHSIERCYKLHGFPQDKGKKLANCAQGDSVLDISENDIGSGSSAHTLTQEQIQHLVSLVSQHHLTPSTSSGPSFTHDQSANSVFLAGKALCLLSSSVNHKWIID

Click here to download the sequence:
Link to NCBI Protein BLAST