Transcript Information: R_Transcript_279677.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value1E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.264919065452
Replicate 212.703643949357
Replicate 312.127096374434
Condition 2: 8 Hour
Replicate 112.757341401086
Replicate 213.717179616862
Replicate 312.050228899249
Condition 3: 24 Hour
Replicate 111.189519489133
Replicate 29.4522538102474
Replicate 310.300096323246


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_279677.p1 GENE.R_Transcript_279677~~R_Transcript_279677.p1 ORF type:5prime_partial len:119 (-),score=16.00,DDE_Tnp_4|PF13359.2|4.5e-10,Plant_tran|PF04827.10|5.2e-06 R_Transcript_279677:136-492(-)
TGTTTCAACATGAAGCACGCTAAAGCTAGGAATGTAATAAGAAGAAGCTTCGGACTCTTAAAAGGAAGGTGGGCTGTTCTAAGGAGCCCGTCATTCTTTCCAATACGAACTCAGGGTCGCATAGTTCATGCATGTGTTATATTGCATAACCTGATTCGGAAGTTGATGCCTACTGATGATATGGTTTATGATGGGGATGAAGATGCTGAGGACGGTGATGATAATTATGGTTATGATGATGATGAAGTTGAATTTATTACTTATGCTCAATCATCAGATTCTTGGACCACTTTTAGGGATATCTTAGCACAAACTTCATTTAATGAATGGAGAGCTAGATCTTCTAGGGCGACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_279677.p1 GENE.R_Transcript_279677~~R_Transcript_279677.p1 ORF type:5prime_partial len:119 (-),score=16.00,DDE_Tnp_4|PF13359.2|4.5e-10,Plant_tran|PF04827.10|5.2e-06 R_Transcript_279677:136-492(-)
CFNMKHAKARNVIRRSFGLLKGRWAVLRSPSFFPIRTQGRIVHACVILHNLIRKLMPTDDMVYDGDEDAEDGDDNYGYDDDEVEFITYAQSSDSWTTFRDILAQTSFNEWRARSSRAT*

Click here to download the sequence:
Link to NCBI Protein BLAST