Transcript Information: R_Transcript_280867.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value5E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.59007416879479
Replicate 20.38463050331581
Replicate 30.46899570509364
Condition 2: 8 Hour
Replicate 10.316627563973
Replicate 20.19276622276884
Replicate 30.35207865427475
Condition 3: 24 Hour
Replicate 10.34634622972829
Replicate 20.21389798493017
Replicate 30.37737421873961


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_280867.p1 GENE.R_Transcript_280867~~R_Transcript_280867.p1 ORF type:5prime_partial len:928 (+),score=95.20,RVT_1|PF00078.23|2.1e-41,RVT_3|PF13456.2|8.3e-22,zf-RVT|PF13966.2|2.1e-20,zf-RVT|PF13966.2|1.2e+04 R_Transcript_280867:1-2784(+)
AAAGCCCCGGGTCCGGATGGGTTTCAGCGTTTATTTTTTCAGCGGAATTGGGAAGTTGTTGGAGAGAGTCTAATTAATCATTCCTTGGACATTCTTCATGGGAGGGAGTTCCTTGAGGGTTTTGATGAAACATTCATTGTACCCATACCGAAAGTGGAAAGCCCAATGAGTATCAAACAGTTTCGTCCGATCTCACTCTGCAATGTTATTTATAAGGTCGCGACGAAAGTTATTGCTAATAGGCTTAAACCCATCCTTCCTACTCTAGTTTCACCTCATCAAGCTAGTTTTATCCCGGGGAGACAGATTACTGACAATATTGTCATTGCCCAGGAAGTGATACACACTATGGGCAAAAAGCAGGGAGGCAAGGGTCTCATGGCAATCAAAGTTGACTTTGAAAAAGCTTATGACAGGCTCCGGTGGGCCTTTATCCGCGAGTCACTGATGGAGTTGAGACTGCCACAACACCTAATCGATATTATTATGAGGTGCATCTCAAGCACCTCCATGAGTGTCCTTTGGAATGGAAGCCCAACAGAAAAGTTCATCCCATCCAGAGGGGTGCGCCAAGGTGATCCTTTATCACCTTACCTTTTTGTTATTTGTATGGAAAGGTTGCAACAGTTAATTGAACAGGAGGTTGCTAGAGGTATTTGGAAACCCATTCGAGTTTGTCGTGGAGGTCCTCTGATTCCAAGTCTCTTCTTTGCGGATGATTTAATCCTTTTCGGGGAAGCCTCGGTGGATCAAGCCAAGTGCATGCGAGATTGTTTAAGCCAATTTGAAGAGGCTTCGGGAGAAAGGGTAAGCCTACCAAAGTCCCGGGTTTATTTCTCTCCTAACACTTCTGAACATATGAGGGAAGCTTTGTGTTATGAGCTACAAATTGAGGAGACCGATGACCTTGGCCTTTACCTTGGAGTACCTTTGATATCGGGCAGAGTCACGAAAGAGACTTACCAGAGGGTCGTGGAAAGAGTAAATTCCAAACTTTCTGGATGGAAAACTAAGTGTCTCTCGGCGGCAGGAAGGGTGACGCTAATTCAATCAACCCTTCACTCCATCCCTTACTACTCTATGCAGACAGCAAAGCTACCAAGATCTATTTGTGATGAGCTTGATCGCAAGACAAGGCGATTCCTATGGGGAGGCAGCGAGGGCATAAGGCGTATCCACCTAGTCTCGTGGGACACGGTGAACCAACCCAAAAGCAATGGAGGTTTAGGTCTTCGATCAATGAGACAAGCCAACTCTGCTTTTCTTACCAAGCTAGGATGGCGAGTATTGGCAGAACCAGAGTCGCTTTGGTCCCGGGTTCTCCGGGCAAAATACTGCAACGGGCGTTGTGACGTTGATATGTTCCAACCAAAGCTGGGAACCTCAAGTACATGGCGCAGCATTGTAGAAAATAGAAAGTATATACAACAAGGAGTAAATGCCGCCATAAGCAATGGTCGTAGCACCTTATTCTGGAGCCATAATTGGGCCATCAATCACCCCCTCTCAAAGGAAGTGCTAAGACCAATCCCCCCAGATGATGAAGATGCCACTGTTGAAGAGTACTGGGACCCCAACTACGGGTGGAAATGGGAGAAGTTAGGGGACTTACTTCCCCCCCACATTCTAAAGGAGATTGCCGCTTTTGAAGTACATGAAAACTCTGAAGAAGCTGATACATTATACTGGAATGGAAGCTCGCATAGAGGTTTTTCTATTGCATCTGCACTAGACATTATTCGTCGTGATGACCTGCTGCCGCAATGTGAGGACTGGTCCCATATCTGGAGCGCCCCAGCTCCACCCCGGGTGAAATTCTTTATGTGGCTTATAGCCCATGACCGTATTTTGTCCAACGCCAATAGAATGATACGTGGGCTTACTGATGACCCAAGTTGCAAGGTGTGTGGAGCCAGGGAGGAGACCACCTCCCACATACTCAGAGAATGCTCAGCTGCTCGTAGAGTTTGGCAGGACCTTGGAGTTCCACAATCTGTTCTATCCTTAACCCCACTGCGTCAATGGATTGTCAATCACCTCAAGGCTAATTATGGAGCGTCCCATGCAGAGTGGCCTACGGTCTTTGCCATGTCCCTCTGGTGGATATGGAGATGGCGCAATATGCGTGCTTTTAATGAGGGAACTGGGATCCCATTACAACGGGCCAACTTCATTGTCGATATAGTCTTGGAGGTGCAGAGGGCTATGGGCTTTGAGGAACACCTGATGCTACGAGGTGGACCATATCGACAAGAGAAGCTTATATCATGGAAGTCGCCTCCCATGGGCACATACAAGTTGAATATTGATGGGGCCTCGAAAGGTAACCCCGGGCAAGCTGGAGGTGGGGGTGTGATCCGAGACTCATGTGGCAGATTCATAAAGGGTTTTGCAGCCTCATTTGGGGTTTGTTCGGTTACAAGGGCAGAGCTCATGGCGGTCCTCAAAGGCCTCACTGTTGCATGGAATTTGGGAATAGAGAACCTGGAAATTGAGGTGGACTCAAAGATCATTGTGGGACTTCTCCTCAAGACTTCCCCACAAAAGTCTGCAATGTTCCATCTAGTTAACAAGTGTAAGATGCTAATGAATAAAGAGGGCTGGTCCGTATCCATTCGGCATTGCTTTAGAGAAGCGAATCGGGTCGCAGACTGGCTAGCGAACAGGGGAGTTTACCAGCAAGGTGTCTATACTGAGTTTTCGACTCCACCCGACGAGCTACGCCAGATTCTGGTGGAAGATATAAGAGGCGTTGGCTGGCCGAGGATGGTCCCTGTCACTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_280867.p1 GENE.R_Transcript_280867~~R_Transcript_280867.p1 ORF type:5prime_partial len:928 (+),score=95.20,RVT_1|PF00078.23|2.1e-41,RVT_3|PF13456.2|8.3e-22,zf-RVT|PF13966.2|2.1e-20,zf-RVT|PF13966.2|1.2e+04 R_Transcript_280867:1-2784(+)
KAPGPDGFQRLFFQRNWEVVGESLINHSLDILHGREFLEGFDETFIVPIPKVESPMSIKQFRPISLCNVIYKVATKVIANRLKPILPTLVSPHQASFIPGRQITDNIVIAQEVIHTMGKKQGGKGLMAIKVDFEKAYDRLRWAFIRESLMELRLPQHLIDIIMRCISSTSMSVLWNGSPTEKFIPSRGVRQGDPLSPYLFVICMERLQQLIEQEVARGIWKPIRVCRGGPLIPSLFFADDLILFGEASVDQAKCMRDCLSQFEEASGERVSLPKSRVYFSPNTSEHMREALCYELQIEETDDLGLYLGVPLISGRVTKETYQRVVERVNSKLSGWKTKCLSAAGRVTLIQSTLHSIPYYSMQTAKLPRSICDELDRKTRRFLWGGSEGIRRIHLVSWDTVNQPKSNGGLGLRSMRQANSAFLTKLGWRVLAEPESLWSRVLRAKYCNGRCDVDMFQPKLGTSSTWRSIVENRKYIQQGVNAAISNGRSTLFWSHNWAINHPLSKEVLRPIPPDDEDATVEEYWDPNYGWKWEKLGDLLPPHILKEIAAFEVHENSEEADTLYWNGSSHRGFSIASALDIIRRDDLLPQCEDWSHIWSAPAPPRVKFFMWLIAHDRILSNANRMIRGLTDDPSCKVCGAREETTSHILRECSAARRVWQDLGVPQSVLSLTPLRQWIVNHLKANYGASHAEWPTVFAMSLWWIWRWRNMRAFNEGTGIPLQRANFIVDIVLEVQRAMGFEEHLMLRGGPYRQEKLISWKSPPMGTYKLNIDGASKGNPGQAGGGGVIRDSCGRFIKGFAASFGVCSVTRAELMAVLKGLTVAWNLGIENLEIEVDSKIIVGLLLKTSPQKSAMFHLVNKCKMLMNKEGWSVSIRHCFREANRVADWLANRGVYQQGVYTEFSTPPDELRQILVEDIRGVGWPRMVPVT*

Click here to download the sequence:
Link to NCBI Protein BLAST