Transcript Information: R_Transcript_281173.p1


Annotated TAIR IDAT5G16340.1
Annotated Gene NameAMP-dependent synthetase and ligase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5349255-5350907 | Reverse length=550
E-Value1.3E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.77125187132614
Replicate 20.14786127053731
Replicate 31.1292053744582
Condition 2: 8 Hour
Replicate 10.17243566864257
Replicate 20
Replicate 30.25565648761108
Condition 3: 24 Hour
Replicate 10.16167469878665
Replicate 20.31063744916306
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_281173.p1 GENE.R_Transcript_281173~~R_Transcript_281173.p1 ORF type:5prime_partial len:142 (+),score=28.69,AMP-binding_C|PF13193.2|1.1e-21,AMP-binding|PF00501.24|3.1e-07,AMP-binding|PF00501.24|1e+03 R_Transcript_281173:2-427(+)
CTAAGAACAGGGGACCTAGCCGTGAGGCACCCTGATGGGTATTTAGAAATCAAGGATCGGTCAAAGGATATTATCATCAGTGGTGGGGAGAATATTAGTAGTGTCGAGGTTGAATCAGTGCTCTATACATTTCCGGGGTTGAAGGAGGCCGCAGTTGTGGCTCGCCCCAATGACTACTGGGGCGAGACACCATGTGCGTTTGTGTCCTTCAACCCCGAAATCATGACTTCAAAGACGAAGGAAGAAATCGAGAAAGAAATTATCGAGCATTGTAGGAAGGACATGGCGGATTATATGGTGCCTAAGACTGTTGTTGTAATGGAGGAGCTGCCCAAGACTTCTACAGGAAAGATCAAGAAGTTTGTACTACGAGAGAAGGCCAAAATTTTGGATGATGATAAAATTACTTCTACTACATGCGACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_281173.p1 GENE.R_Transcript_281173~~R_Transcript_281173.p1 ORF type:5prime_partial len:142 (+),score=28.69,AMP-binding_C|PF13193.2|1.1e-21,AMP-binding|PF00501.24|3.1e-07,AMP-binding|PF00501.24|1e+03 R_Transcript_281173:2-427(+)
LRTGDLAVRHPDGYLEIKDRSKDIIISGGENISSVEVESVLYTFPGLKEAAVVARPNDYWGETPCAFVSFNPEIMTSKTKEEIEKEIIEHCRKDMADYMVPKTVVVMEELPKTSTGKIKKFVLREKAKILDDDKITSTTCD*

Click here to download the sequence:
Link to NCBI Protein BLAST