Transcript Information: R_Transcript_28333.p1


Annotated TAIR IDAT5G52180.1
Annotated Gene NameLOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, predicted (InterPro:IPR019395); Has 82 Blast hits to 82 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21200165-21201541 | Reverse length=458
E-Value2.6E-155
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.866465380929
Replicate 28.5556650344998
Replicate 36.9053574874056
Condition 2: 8 Hour
Replicate 111.046637616533
Replicate 211.017731801166
Replicate 312.453287951617
Condition 3: 24 Hour
Replicate 19.6890537780123
Replicate 29.812526824498
Replicate 311.05761380232


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_28333.p1 GENE.R_Transcript_28333~~R_Transcript_28333.p1 ORF type:complete len:481 (+),score=61.19,Tmemb_161AB|PF10268.5|2.4e+03,Tmemb_161AB|PF10268.5|3.5,Tmemb_161AB|PF10268.5|1.4e-09 R_Transcript_28333:186-1628(+)
ATGTATTCAATCTTTCTCTCATACAAAAACCTGATCTTTCAAATCTCACTCTCCCTTTCACTCTCAATTCTCTTTTATTTCATCAATCTACCATCCCTCTTTCTTCAAGGCCTCAACACTTACATCCACCCAGATGATGTTAACCCCACAAAACCCCAATCTGGTCCCAAAGTTGCCATTAGAAGACCTTCTGACAACAACAATCCCAACCAAGGCCTTAATGGGTTTCAGTCACTTTCATCAAAGACATCTTCTGAACTCAGAAACAGGAAGAAACCACCCAAGGAAAAATTTGAATTTGATGAGAGTAAAGCTCAGATCTTTCGGCTTAAACTAGGTGATGCGCATATACACTCACGCCTTTATTATGATAGCTATAGGAGTTGCTTTAATTCCTTTGTTATTTCTTGTTCTTGCTTTTGTTTGCATAAGTATCTGAATGTGGGTGTTGATGATAATGATAATGATAATGATGGGTCTGGGGTGTTAAAAAATGGGTCTTTAGTTCCAATTATAATTATAATTGGGGTTTTGGGTTTGTTTAGGGTTCTGATTTCACTGTTTCGAGTTTCGCTCGAAAGATCTGCTTTTAAGAGGAGTGAAAGGCAATTGGGATTGGTGGTTGGGGTTTTGGGTTTTTTTGTAGGACTTGTGATCTGCTTGGGGGTGTATCCTTGGTTGTTCGACTTTGAATTTAGCTCAGTTGATGGTTTTGGGAGATTGTTTACGTCTCTCCTTGCTGGTTCTATAGCCGGTTTCTTGTACCTTGCGGCTGGTAAGAATGCTCGAGCATTCTGGCTTGGAACTGATCAAATAAGGTGTAATTTGTCGATAATTTCGTGTGGAGGGATTGCTCAGACGTTTCTTTATGCTAATTATTTGATGGTAGCGTTTACTTCATTGCTTTGGATCAAGCCATTTGCTGCAATTCTTGTGAACAAGAACATTGGTGGTAGTAGAGATGCACAAGGTATTGGAGACAGAGCAAAGTTGGTTGGAAATGTGGGTATGGTAGAAGCCGAGTTTGTCAAGTTTAGGTTATGGTGCTTGTTGCTTACAGGGGTTTTTCAGGTCTTTTTGTTGCGTGTGAATCTACAAACTTACTTGAATGAGGCGGTTTTATCTTGGTACCAAAGGTTGCATGCTAGCATGGTTCCTGAGATGGATTACAGCAGGGCTAAGGTTTTCCTGCATAATCACATCTTGTGCCTTGTGGTTTTGCAATTTTTTGCGCCAGGAGCATTAATACTTATCTCCCTGGGATTGGCTCAGGCTGATGGTGGTTTGTTTGAGAACTTTCAACTGGCTTGTAGTTTGCTGCCTTGCTCGGCTTTCGTTAAAGAAGTTGCCCTTTTCCTGGCTTGGTGGGTAGCCTTTGTGTGGTTTGTTTTCACCTCAGTGTACCTTGCTTTCTATAGGCGTGGATTTTTGTATGTTTCGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_28333.p1 GENE.R_Transcript_28333~~R_Transcript_28333.p1 ORF type:complete len:481 (+),score=61.19,Tmemb_161AB|PF10268.5|2.4e+03,Tmemb_161AB|PF10268.5|3.5,Tmemb_161AB|PF10268.5|1.4e-09 R_Transcript_28333:186-1628(+)
MYSIFLSYKNLIFQISLSLSLSILFYFINLPSLFLQGLNTYIHPDDVNPTKPQSGPKVAIRRPSDNNNPNQGLNGFQSLSSKTSSELRNRKKPPKEKFEFDESKAQIFRLKLGDAHIHSRLYYDSYRSCFNSFVISCSCFCLHKYLNVGVDDNDNDNDGSGVLKNGSLVPIIIIIGVLGLFRVLISLFRVSLERSAFKRSERQLGLVVGVLGFFVGLVICLGVYPWLFDFEFSSVDGFGRLFTSLLAGSIAGFLYLAAGKNARAFWLGTDQIRCNLSIISCGGIAQTFLYANYLMVAFTSLLWIKPFAAILVNKNIGGSRDAQGIGDRAKLVGNVGMVEAEFVKFRLWCLLLTGVFQVFLLRVNLQTYLNEAVLSWYQRLHASMVPEMDYSRAKVFLHNHILCLVVLQFFAPGALILISLGLAQADGGLFENFQLACSLLPCSAFVKEVALFLAWWVAFVWFVFTSVYLAFYRRGFLYVS*

Click here to download the sequence:
Link to NCBI Protein BLAST