Transcript Information: R_Transcript_28337.p1


Annotated TAIR IDAT5G52180.1
Annotated Gene NameLOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, predicted (InterPro:IPR019395); Has 82 Blast hits to 82 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21200165-21201541 | Reverse length=458
E-Value1E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.11129938612384
Replicate 20.20328074401078
Replicate 30.24752196300528
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.19897913351725


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_28337.p1 GENE.R_Transcript_28337~~R_Transcript_28337.p1 ORF type:complete len:220 (+),score=23.12 R_Transcript_28337:186-845(+)
ATGTATTCAATCTTTCTCTCATACAAAAACCTGATCTTTCAAATCTCACTCTCCCTTTCACTCTCAATTCTCTTTTATTTCATCAATCTACCATCCCTCTTTCTTCAAGGCCTCAACACTTACATCCACCCAGATGATGTTAACCCCACAAAACCCCAATCTGGTCCCAAAGTTGCCATTAGAAGACCTTCTGACAACAACAATCCCAACCAAGGCCTTAATGGGTTTCAGTCACTTTCATCAAAGACATCTTCTGAACTCAGAAACAGGAAGAAACCACCCAAGGAAAAATTTGAATTTGATGAGAGTAAAGCTCAGATCTTTCGGCTTAAACTAGGTGATGCGCATATACACTCACGCCTTTATTATGATAGCTATAGGAGTTGCTTTAATTCCTTTGTTATTTCTTGTTCTTGCTTTTGTTTGCATAAGTATCTGAATGTGGGTGTTGATGATAATGATAATGATAATGATGGGTCTGGGGTGTTAAAAAATGGGTCTTTAGTTCCAATTATAATTATAATTGGGGTTTTGGGTTTGTTTAGGGTTCTGATTTCACTGTTTCGAGTTTCGCTCGAAAGATCTGCTTTTAAGAGGAGTGAAAGGCAATTGAATTTAGCACAGTTGATGGTTACGGGAGATTGTTTATCGCTCTCCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_28337.p1 GENE.R_Transcript_28337~~R_Transcript_28337.p1 ORF type:complete len:220 (+),score=23.12 R_Transcript_28337:186-845(+)
MYSIFLSYKNLIFQISLSLSLSILFYFINLPSLFLQGLNTYIHPDDVNPTKPQSGPKVAIRRPSDNNNPNQGLNGFQSLSSKTSSELRNRKKPPKEKFEFDESKAQIFRLKLGDAHIHSRLYYDSYRSCFNSFVISCSCFCLHKYLNVGVDDNDNDNDGSGVLKNGSLVPIIIIIGVLGLFRVLISLFRVSLERSAFKRSERQLNLAQLMVTGDCLSLS*

Click here to download the sequence:
Link to NCBI Protein BLAST