Transcript Information: R_Transcript_283451.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.26326385992383
Replicate 20.13459166933524
Replicate 30.18354757689225
Condition 2: 8 Hour
Replicate 10.23544100910813
Replicate 20.4658517050247
Replicate 30.40724767417535
Condition 3: 24 Hour
Replicate 10.36791357736705
Replicate 20.28275972936638
Replicate 30.28061159854997


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_283451.p1 GENE.R_Transcript_283451~~R_Transcript_283451.p1 ORF type:3prime_partial len:624 (+),score=122.08,UBN2_3|PF14244.2|9.6e-43,Retrotrans_gag|PF03732.13|2.2e-09,gag_pre-integrs|PF13976.2|1.3e+03,gag_pre-integrs|PF13976.2|8.4e-06,UBN2|PF14223.2|6.2e-05,UBN2|PF14223.2|2.1e+02,UBN2|PF14223.2|9.9e+03 R_Transcript_283451:60-1928(+)
ATGTCAACAGAGAATTCTTCCACGATTGATCCTTCTAATCCTCTATACTTGCGTCCTTCTGATAATCCTGGTATGATTCTCATTACTAAACCTTTTGATGGAAACGGATTTGGCTCATGGAAGAAAGCTTTCACCATAGCTCTGTCAGCTAAGAACAAGATTGGATTTGTAACTGGAAAGGTTCCTAAGCCTGATTCTACTGATAAGAACTTCAACCAATGGCAAAGATGCAATGATATGATCACTTCATGGATACTGAATGTTCTTTCCAGAGACATAGCTGAGAGTGTAATATACTCAAATTCTGCTCAAGATATTTGGAATGAGCTTGATGATAGGTATGGACAATCTAATGGACCTAAGTTGTATCAGCTTCAAAAGGATCTCTCATCTATGTCACAAGAAGGTATAGATATTGCAAGTTATTTCACAAAATTCAAATCAATCTGCGATGAATTGAATGCTCTTTCCACTGTCCCTCCCTGTACATGTGGTTCTGCTTCTCAGTTTCTTAAAATTCAACAAGATCAAAGACTTGTTCAATTCTTGATGGGACTTAATGATGACTATAATGTTGCTCGTGGTAATATTCTCATGATGAAACCTCTACCTTCCCTTTCTACTGCTTATGGACTGTTGATTTCTGATGAAAAACAAAAAGAAATTCATGCTACATCTCATATTCTTCCTGAATCTTCTGCAATGGCTGTAAAACCTGGACACAAGCTTCAATCACCTCCTTATATTCCACAAAGCTACAATCAACATTCTGGTTACAGGAAACCTCTTATCTGTAATCATTGCAAGAAACCAGGGCATGTTGCTTGTAAATGCTACAGACTTATTGGATTTCCCAAGGATTTCAGATTCACTAAAAATTCAAGAATTGCTGCCAATGTGTACTCTGAAGATCATTCCTCTGTACATCCTTCTGAAGGTTTTTCTGCTGATCAGTCTCAACACTCTCAGCATCATACTCTCACTACTGAACAATATCAACAATTCTTGGCTCTTCTCAACAATGCCTCTGTTCATTCATCTCCTGCTACTATTCATTCTTCTATTGCTGCAGCTGCCAACAATGTTATAGCTCATGACTCTACTGGTATCACTTCTGCTGTTAACTTTGCAGGTATAGTTGCTGGCACTTCTCATAATTTGTTAGGTTCTTCTATTTGTTGTAGTAGCTCTGCCTCTGCTGATAGGACTTGGATTGTTGATTCCGGTGCTAGTGATCACATGTGTGCATTTCGTTATCTTTTCTGTCATATTGAACCTCTTAAAATGCCTTTCAATATTACCTTACCTAATGGACAGTATGTTATTGTATCTGAAATAGGACATGTCAAGCTTACTCAGGACATCTTATTACAAAATGTTCTTCTTGTTCCTCACTTCAAATATAATCTACTTTCTATTCATAAAATCTGTCAACAACTCAATTGCACTGTATCCTTTACTAAAACTCAGTGTATATTACAGGGCCTTTCTCTGAGGAGGCCTCAGGCTCTTGGTAATGTGCATGGAGGATTATATCTCTTTCACCTGCCACCTGTTTTTCAACAACAATCTGTTCCAGTTATGTCTTCTGCCTGTACAGAGAATCAGTCTACTCTTGTTTGCGATCATGTCAATCTAGTTCATTCTGTACTTGATGTTACATCTTGTAATACTTGTACTGAACATGTTGCTCATGATGGTAATAAAACTGTTCTTGACTCTGATTGTTCTAATGATTCTGTTATGCATTGTCATGTTTCTGTGTCAGATAATTTTCTTCTTTGGCATAAAAGGCTTGGCCATTTACCCTTCTATAAACTCAAAACTCTCCCTTTTCTTCATGGTTCCATTAATCCCCCTTCCATTCCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_283451.p1 GENE.R_Transcript_283451~~R_Transcript_283451.p1 ORF type:3prime_partial len:624 (+),score=122.08,UBN2_3|PF14244.2|9.6e-43,Retrotrans_gag|PF03732.13|2.2e-09,gag_pre-integrs|PF13976.2|1.3e+03,gag_pre-integrs|PF13976.2|8.4e-06,UBN2|PF14223.2|6.2e-05,UBN2|PF14223.2|2.1e+02,UBN2|PF14223.2|9.9e+03 R_Transcript_283451:60-1928(+)
MSTENSSTIDPSNPLYLRPSDNPGMILITKPFDGNGFGSWKKAFTIALSAKNKIGFVTGKVPKPDSTDKNFNQWQRCNDMITSWILNVLSRDIAESVIYSNSAQDIWNELDDRYGQSNGPKLYQLQKDLSSMSQEGIDIASYFTKFKSICDELNALSTVPPCTCGSASQFLKIQQDQRLVQFLMGLNDDYNVARGNILMMKPLPSLSTAYGLLISDEKQKEIHATSHILPESSAMAVKPGHKLQSPPYIPQSYNQHSGYRKPLICNHCKKPGHVACKCYRLIGFPKDFRFTKNSRIAANVYSEDHSSVHPSEGFSADQSQHSQHHTLTTEQYQQFLALLNNASVHSSPATIHSSIAAAANNVIAHDSTGITSAVNFAGIVAGTSHNLLGSSICCSSSASADRTWIVDSGASDHMCAFRYLFCHIEPLKMPFNITLPNGQYVIVSEIGHVKLTQDILLQNVLLVPHFKYNLLSIHKICQQLNCTVSFTKTQCILQGLSLRRPQALGNVHGGLYLFHLPPVFQQQSVPVMSSACTENQSTLVCDHVNLVHSVLDVTSCNTCTEHVAHDGNKTVLDSDCSNDSVMHCHVSVSDNFLLWHKRLGHLPFYKLKTLPFLHGSINPPSIP

Click here to download the sequence:
Link to NCBI Protein BLAST