Transcript Information: R_Transcript_283453.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value8E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.23401231993229
Replicate 20.53836667734098
Replicate 30.44051418454139
Condition 2: 8 Hour
Replicate 10.15696067273875
Replicate 20
Replicate 30.11635647833581
Condition 3: 24 Hour
Replicate 10.14716543094682
Replicate 20.28275972936638
Replicate 30.14030579927498


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_283453.p1 GENE.R_Transcript_283453~~R_Transcript_283453.p1 ORF type:complete len:156 (+),score=32.88,UBN2_3|PF14244.2|3.9e-40,Retrotrans_gag|PF03732.13|1.6e+03,Retrotrans_gag|PF03732.13|2.9e-07 R_Transcript_283453:712-1179(+)
ATGGCTGCAGAAACTTCATCTTCCATCGAACCTTCAAATCCTCTTTATCTTCATCCTTCAGATCATCCAGGTTTAATGATGGTTTCAAAGGTGTTTGATGGCTCTAGTTTTGGTGCTTGGAAGAAATCTTTTAGCATAGCACTTTCTGCCAAAAACAAGCTAGGTTTTGTCACAGGGACAGTTCAGAAACCAATCTCCACTTCTCCAATCTTTGAATACTGGCAGAGATGTAATGAAATGGTCACTGCTTGGTTATTGAATGTTTTGTCAAGAGAAATTGCAGACAGTGTGATCTACTCCAATTCAGCTCAAGAAATTTGGCAAGAACTTAATGATCGTTATGGTCAAGCTACTAGTCCTAAGTTGTATCAATTACAGAAAGATATATGCTCAATGTCTCAAGAAAACACAGACATAGCATCATATTTCACAAAATTCAAGGCTCTTTGTGATGAATTCAATACCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_283453.p1 GENE.R_Transcript_283453~~R_Transcript_283453.p1 ORF type:complete len:156 (+),score=32.88,UBN2_3|PF14244.2|3.9e-40,Retrotrans_gag|PF03732.13|1.6e+03,Retrotrans_gag|PF03732.13|2.9e-07 R_Transcript_283453:712-1179(+)
MAAETSSSIEPSNPLYLHPSDHPGLMMVSKVFDGSSFGAWKKSFSIALSAKNKLGFVTGTVQKPISTSPIFEYWQRCNEMVTAWLLNVLSREIADSVIYSNSAQEIWQELNDRYGQATSPKLYQLQKDICSMSQENTDIASYFTKFKALCDEFNT*

Click here to download the sequence:
Link to NCBI Protein BLAST