Transcript Information: R_Transcript_283456.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.12588248934289
Replicate 20
Replicate 30.15797750066312
Condition 2: 8 Hour
Replicate 10.16886803411893
Replicate 20.46263893464522
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.45284906248753


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_283456.p1 GENE.R_Transcript_283456~~R_Transcript_283456.p1 ORF type:3prime_partial len:145 (+),score=28.76,UBN2_3|PF14244.2|1.8e-36,Retrotrans_gag|PF03732.13|2.6e+03,Retrotrans_gag|PF03732.13|2.1e-05 R_Transcript_283456:201-632(+)
ATGTCTACTGATTCGTCTACAACAATTGATCCTTCAAGTCCACTTTATCTTCATCCATCAGATAATCCAGGAATGATTCTCATCACCAAGTCTTTTGATGGTATTGACTTTGGTTCATGGAAGAAAGCTTTCACAATAGCTTTATCGGCTAAGAACAAGCTCGGTTCTGTCACTGGAAAGGTTATTAAACCTAATTCGACTGATAAAAATTTCAGTCAATGGCAAAGATGCAATGATATGATTACTTCATGGATCTTGAATGTTCTTTCTCGAGATATTGCTGAGAGTGTGATTTACTCTGATTCTGCTCAAGATATTTGGAATGAGCTTGATGATCGCTACGGTCAATCTAATGGTCCCAAACTATATCAACTTCAAAAGGATCTTAGCTCAATGTCTCAAGAAGGTATCACTATTGCTAGTTATTTCACT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_283456.p1 GENE.R_Transcript_283456~~R_Transcript_283456.p1 ORF type:3prime_partial len:145 (+),score=28.76,UBN2_3|PF14244.2|1.8e-36,Retrotrans_gag|PF03732.13|2.6e+03,Retrotrans_gag|PF03732.13|2.1e-05 R_Transcript_283456:201-632(+)
MSTDSSTTIDPSSPLYLHPSDNPGMILITKSFDGIDFGSWKKAFTIALSAKNKLGSVTGKVIKPNSTDKNFSQWQRCNDMITSWILNVLSRDIAESVIYSDSAQDIWNELDDRYGQSNGPKLYQLQKDLSSMSQEGITIASYFT

Click here to download the sequence:
Link to NCBI Protein BLAST