Transcript Information: R_Transcript_28378.p1


Annotated TAIR IDAT5G22010.1
Annotated Gene Namereplication factor C1
Annotated Gene Symbol(s)AtRFC1, RFC1
Annotation TypeOrtholog
Chromosome Positionchr5:7280632-7287037 | Reverse length=956
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.346088306529
Replicate 210.583849393522
Replicate 313.183061228806
Condition 2: 8 Hour
Replicate 111.943105555901
Replicate 212.846098445497
Replicate 315.706699802131
Condition 3: 24 Hour
Replicate 116.656123407038
Replicate 212.738037277619
Replicate 316.817797580851


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_28378.p1 GENE.R_Transcript_28378~~R_Transcript_28378.p1 ORF type:complete len:980 (+),score=286.12,RFC1|PF08519.8|6.1e-44,BRCT|PF00533.22|6.4e-17,BRCT|PF00533.22|1.6e+04,AAA|PF00004.25|4.4e-10,Rad17|PF03215.11|3.6e-05,Rad17|PF03215.11|1.1,PTCB-BRCT|PF12738.3|2.6e-06 R_Transcript_28378:119-3058(+)
ATGTCAGATATTAGGAAGTGGTTTATGAAGAAACATGACAAGGAAAATGGCAATGCAGCCAAGCCAGGAGGAGCGAAGCCAGCATCTGGAAAGCCTTCCACTGCTGCTTCCCCACAACCTGAGAAGCCTAAAGGCGAAGAAAGTGCTGCTAGAAGGAAAACGAGCAAATACTTTGACAAAGATCCAGAGAAGTCAAAAGCTGAGAGTGAGAAAGGGGAGATTTCAGCCAAACGAAAGACTGAAAAGGGCAGTCGGGATGCCCATGATACTATCAAACCACCACCTGCCAAGAAGGTTCACATAGTTGAGGATGAAGATGACGACGATGATTATGCTCCAATTAGTGCCAGGAAGAAGACAGATGAGACTACTCCTACCAAAAAATTAAAGAGTGGTTCTGGTAGGGGTATTGCACAGAAAAATGTGGATGTTGATTTGAGTGATGATGAAATGGATGCTGAGAAGGAGACTGATACTCCAGCTAAATCTGGTGGAAGGGGTCGTGGAGGGAGGGCCTCCTCTACACCTGCTGCTGGTGGACGAGGAAGAGGAGCTGGTAGACGAGGTGGGTTCATGAACTTTGGTGAGAGGAAAGATCCACCCCATAAAGGCGAAAAGGAAGTTCCTGAAGGCGCTCCTGATTGTTTAAATGGCTTGACTTTCGTGATTTCTGGAACACTAGACAGTTTGGAAAGGGAAGAAGCTGAAGATTTGATCAAACGGCATGGTGGTCGTGTTACTGGATCAGTCAGCAAGAAAACGAATTATCTTTTATGTGATGAGGATATTGGGGGACGGAAATCTGAAAAAGCCAAAGAACTGGGAACACGTTTTCTGACAGAGGATGGATTGTTTGATATGATTTATGCATCCAAAAATTCAATGAAAGCATCTACTGGAGACAATTCAAAAAAACCTTCTGATAGCAATGCCGCATCTACTGTGAGGAGAATTCAACAAAATGTGGAAACAAAAAAAGGTGACGGAGGCAAATCTTCTGCCAAAACTAAAGCTCCTGTATCATCTTTAGGTGCCTCTCCTGCTAAAAAAAAGCCTCTTTCAAAGGAAGGTGCTACTGTGACGTGGACAGAGAAATATAGGCCTAAAGTTCCCAATGAAATAGTTGGCAATCAGGCACTTGTTAAGCGTCTTCATGATTGGTTGTCACATTGGGATGAACATTTTTTACACAATCAAGGAAAGGGGAAAAAGCAGAACAATTCTGGTGACAAAAAAGCTGTCTTAATGAGTGGAAATCCTGGCATAGGGAAAACTACGTCAGCGAAGCTAGTTAGTAAAATGTTAGGTTACGAGACAATTGAGGTCAATGCTAGTGACAACCGTGGGAAGGCTGATTCTAAAATTGGGAAAGGAATAGGTGGAAGTACTGCGAATTCGATAAAGGAGCTTATTAGTAATGAGTCCCTTGGTGGCATGGATAGGTCAAAGCATCTCAAGACTGTTCTTATTATGGATGAGGTTGATGGCATGTCTGCGGGTGATAGAGGTGGGGTTGCTGATCTGATTTCTAGCATCAAGATCTCCAAAATCCCCATCATTTGCATTTGTAATGACCGCTACAGCCAGAAGTTGAAAAGTCTTACAAACTACTGTGAACAACTTACTTTCCGGAAGCCCACAAAACAGCAGATGGGAAAGAGATTGTTGCAAATTGCAAATGCAGAAGGGCTTCAAGTGAATGAGATTGCTTTAGAAGAGCTTGCAGAACGTTGTAATGGTGATATGCGCATGGCAGTGAACCAGCTCCAGTATATGAGCTTGTCCATGTCAGTTATCAAATATGATGATATTAGACAACGTCTTCTTAGCAGTGCTAAGGATGAAGATATTTCTCCATTTACAGCTGTTGACAAGTTGTTTGGTTTTAATGGTGGGAAGTTGAGGATGGATGAAAGGATTGACCTCAGCATGAGCGATCTTGATCTGGTTCCTCTTCTTATCCAGGAAAATTATCTTAACTATCGACCAAGCTCTATGGGGAAAGATGACAGCGGGATAAAAAGGATGCGCTTGCTTGCACGTACAGCTGAATCAATTGCCGATGGAGATATTATTAATGTACAAATCAGAAGATATCGGCAGTGGCAACTCTCTCAAAGTAGCTGTGTTTCTTCCTGCATAGTACCTGCCTCATTGATGCATGGACAGAGGGAGACTCTTATGCCGGGTGAAAGAAACTACAACAGATTTGGTGGATGGCTTGGGAAGAACTCAACATTTGGAAAAAATATGAGAATCTTGGAGGATCTTCATGTTCATGTTCTTTCATCAAGTGAATCCTATTTGGGGAGGGGAACTTTACGACTTGATTACCTTACCCTTCTTTCTAAACAATTAACTGAACCACTTCGAGTTCTTCCCAAGGATGAAGCTGTAAAAAAGGTGGTTGAATTTATGGATGCTTACTCGTTGAGCATGGAAGACTATGAGACGCTTATGGAGTTATCGAAATTTCAGGGGCGCCCTAGTCCAACAGAAGGAATTCTGCCAGCAGTTAAATCTGCATTGACAAAGGCATATAAAGAAGGTAGTAGTTCTCGTGTGGTACGAACAGCAGACATGATCACTCTTTCTGGAATTAAGAAGGCTCCGAAGAAGAGAATTGCTGCTATTTTGGAACCTGTTGATGAAGTAAATGAGGCAGAGCGTGATATTGCCGCTGAAAGCGAGGAAGAGAACCCTGAAGATGCAGAGGATTTGGAGGATACTGGCAATGGTGAGCAAAAGCCGAAGCTGGATCTTGAGAGCAATGATGCAAAAGGAATTCAAGTACAATTGGACCTCAAAGGTGCTGGAAATTCTGGCACCAAGAAAACCCAAAGGGCTCCGGCAGGAAGAGGCAAAGGGGGTTCTTCTGAGCCAGGCTCGGGAAAGAAAGGTGGTCGTGGATCAGGATCTGCATCCAAGAGGAAGAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_28378.p1 GENE.R_Transcript_28378~~R_Transcript_28378.p1 ORF type:complete len:980 (+),score=286.12,RFC1|PF08519.8|6.1e-44,BRCT|PF00533.22|6.4e-17,BRCT|PF00533.22|1.6e+04,AAA|PF00004.25|4.4e-10,Rad17|PF03215.11|3.6e-05,Rad17|PF03215.11|1.1,PTCB-BRCT|PF12738.3|2.6e-06 R_Transcript_28378:119-3058(+)
MSDIRKWFMKKHDKENGNAAKPGGAKPASGKPSTAASPQPEKPKGEESAARRKTSKYFDKDPEKSKAESEKGEISAKRKTEKGSRDAHDTIKPPPAKKVHIVEDEDDDDDYAPISARKKTDETTPTKKLKSGSGRGIAQKNVDVDLSDDEMDAEKETDTPAKSGGRGRGGRASSTPAAGGRGRGAGRRGGFMNFGERKDPPHKGEKEVPEGAPDCLNGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTRFLTEDGLFDMIYASKNSMKASTGDNSKKPSDSNAASTVRRIQQNVETKKGDGGKSSAKTKAPVSSLGASPAKKKPLSKEGATVTWTEKYRPKVPNEIVGNQALVKRLHDWLSHWDEHFLHNQGKGKKQNNSGDKKAVLMSGNPGIGKTTSAKLVSKMLGYETIEVNASDNRGKADSKIGKGIGGSTANSIKELISNESLGGMDRSKHLKTVLIMDEVDGMSAGDRGGVADLISSIKISKIPIICICNDRYSQKLKSLTNYCEQLTFRKPTKQQMGKRLLQIANAEGLQVNEIALEELAERCNGDMRMAVNQLQYMSLSMSVIKYDDIRQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDLDLVPLLIQENYLNYRPSSMGKDDSGIKRMRLLARTAESIADGDIINVQIRRYRQWQLSQSSCVSSCIVPASLMHGQRETLMPGERNYNRFGGWLGKNSTFGKNMRILEDLHVHVLSSSESYLGRGTLRLDYLTLLSKQLTEPLRVLPKDEAVKKVVEFMDAYSLSMEDYETLMELSKFQGRPSPTEGILPAVKSALTKAYKEGSSSRVVRTADMITLSGIKKAPKKRIAAILEPVDEVNEAERDIAAESEEENPEDAEDLEDTGNGEQKPKLDLESNDAKGIQVQLDLKGAGNSGTKKTQRAPAGRGKGGSSEPGSGKKGGRGSGSASKRKR*

Click here to download the sequence:
Link to NCBI Protein BLAST