Transcript Information: R_Transcript_284118.p1


Annotated TAIR IDAT3G48950.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:18148017-18149987 | Forward length=469
E-Value9.9E-230
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.57519834941341
Replicate 20.52931849788987
Replicate 30.62560417804618
Condition 2: 8 Hour
Replicate 10.56584982020945
Replicate 20.42278978271149
Replicate 30.34320272181404
Condition 3: 24 Hour
Replicate 10.38584549962528
Replicate 20.69501866251819
Replicate 30.45982572871633


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_284118.p1 GENE.R_Transcript_284118~~R_Transcript_284118.p1 ORF type:5prime_partial len:476 (+),score=77.06,Glyco_hydro_28|PF00295.13|6.6e-41,Pectate_lyase_3|PF12708.3|2.3e-14,Pectate_lyase_3|PF12708.3|79 R_Transcript_284118:1-1428(+)
GAAAATCTGTTTGTGATATGGTCCAATGATGGCAAGATGGTTTTAATGATGTTGCTAATAGTTGGGCTAATAATAAGCATGAACTCAGTAAAAGGTGATGAACTTCCAAGAGGTTGTCGAAAGCGTGGGGCGTTTTTGACTGATTTTGGAGGTGTAGGAGATGGAAAAACATCAAACACAAAGGCTTTTAAAGCTGCAATTGACAAACTTAGCAAGTATGCAACTGACGGTGGTGCTGAACTTTATGTGCCACCAGGGAAATGGCTGACTGGCAGCTTCAATCTCACTAGCAACTTTACTCTTTACCTTGACAAGGATGCTCTTCTTATTGCATCTCAGGATGAATCAGAATGGCCAGTTCTCCCACCCTTGCCTTCCTATGGAAGGGGCAGGGACGCCCCAGCTGGGAGATATGCTAGTCTGATCTTCGGAACCAACCTAACTGATGTTGTTATCTCTGGTGGAAACGCAACCATTGATGGCAAGGGAGCATACTGGTGGCGCAAGTTCAAGAAGAAAGAGCTTAACTTGACACGGCCTTACTTAATCGAGATAATGTTCTCTGATCAAGTTCAGATCTTCAATCTTACTTTGCTCAATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAGCAATGTCATAGTCCAGGGTATAACAATCAAGGCACCTGTAGATTCTCCTAACACAGATGGGATTGATCCAGATTCTTGCACAAACGTACGAATAGAAGACAGCTTCATAGTCTCAGGAGACGATTGTATAGCGATAAAAAGTGGTTGGGATGAGTATGGGATCAAATTCGGGATGCCAACACAGCATGTAATCATAAGGAGAGTGACCTGCGTTTCCCCTTACAGTGCAACAATTGCATTAGGCAGTGAAATGTCAGGCGGTATCCAAGACGTAAGGGCTGAGGATATCACAGCCATTAACACAGAATCAGCTGTCAGGATCAAGACAGCCCCAGGAAGAGGTGCCTTTGTAAAGGACATCTTTATTAAGGGCATGACCCTCAAGACAATGAAGTATGTGTTCTGGATGACGGGCAATTACGGTTCCCACCCTGATCCTGGTTACGATCCTAAGGCACTGCCTGTAATCAAGGGGATCAACTACAGGGACATAACAGCCGAGGATGTTCAGATGGCGGCTAATCTTGCTGGGATTGAGAACGATAAGTTTACTGGAATTTGCATCTCGAATGCGACTATTTCTATGGCTGAAAAGCATAAGAAAGTTCAGTGGAATTGCACTAATATTGAAGGGGTTACTAGTAGGGTTAGCCCTCAAGCTTGTGATTTATTGCCTGATAAGGAGCCTGGCAAAGTTGTGGCTTGTCCTTTCCCCACTGACAAGCTTCCCATTGAAGATATTGGGTTGAAGACTTGCTCTTTGAGGCCTCACCCTCCAACATTAATAGTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_284118.p1 GENE.R_Transcript_284118~~R_Transcript_284118.p1 ORF type:5prime_partial len:476 (+),score=77.06,Glyco_hydro_28|PF00295.13|6.6e-41,Pectate_lyase_3|PF12708.3|2.3e-14,Pectate_lyase_3|PF12708.3|79 R_Transcript_284118:1-1428(+)
ENLFVIWSNDGKMVLMMLLIVGLIISMNSVKGDELPRGCRKRGAFLTDFGGVGDGKTSNTKAFKAAIDKLSKYATDGGAELYVPPGKWLTGSFNLTSNFTLYLDKDALLIASQDESEWPVLPPLPSYGRGRDAPAGRYASLIFGTNLTDVVISGGNATIDGKGAYWWRKFKKKELNLTRPYLIEIMFSDQVQIFNLTLLNSPSWNVHPVYSSNVIVQGITIKAPVDSPNTDGIDPDSCTNVRIEDSFIVSGDDCIAIKSGWDEYGIKFGMPTQHVIIRRVTCVSPYSATIALGSEMSGGIQDVRAEDITAINTESAVRIKTAPGRGAFVKDIFIKGMTLKTMKYVFWMTGNYGSHPDPGYDPKALPVIKGINYRDITAEDVQMAANLAGIENDKFTGICISNATISMAEKHKKVQWNCTNIEGVTSRVSPQACDLLPDKEPGKVVACPFPTDKLPIEDIGLKTCSLRPHPPTLIV*

Click here to download the sequence:
Link to NCBI Protein BLAST