Transcript Information: R_Transcript_28417.p1


Annotated TAIR IDAT3G55140.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:20438819-20440225 | Forward length=331
E-Value2.9E-197
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 135.421120612387
Replicate 226.041922996959
Replicate 332.436413960443
Condition 2: 8 Hour
Replicate 126.763619826059
Replicate 233.454652677123
Replicate 337.194385586478
Condition 3: 24 Hour
Replicate 137.788432051802
Replicate 228.552156858344
Replicate 338.459015987313


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_28417.p1 GENE.R_Transcript_28417~~R_Transcript_28417.p1 ORF type:complete len:387 (+),score=47.89,Pec_lyase_C|PF00544.15|2.3e-27 R_Transcript_28417:141-1301(+)
ATGGGGAATTCCAAATCACAGTTACAGGGACATCGCAAATACCGGCCCAATCAGCATCAATACCCTCTCCCTCCAAACCCTCCCAATCCCTTCCCAAGCTATATATATCCACCGCAACCTCAACCTCAACCTCAATCAACGAGCAATTCAATGGCGCTGACGTTACCTTACTCTCACGTTGACTCCTCCTTGCGTGCTCTCGCCTCCCAGGCTGAGGGTTTTGGCCGTTTCGCCATTGGCGGCCTTCATGGCCCCGTTTTTCATGTTTCCACTCTTGCAGATGATGGACCCGGATCTCTTCGAGAAGCCTGTCGTAAGAAGGAACCACTCTGGATAGTGTTTGAAGTTTCAGGGTTAATTCATCTCCGTTCTTACCTGAATGTATCATCTTATAAAACAATAGATGGACGTGGACAGAGAATTAAATTCACAGGAAAAGGGTTAAGGCTGAAGGAATGTGAACACGTGATTATATGTAATCTGGAGTTTGAAGGGGGCAGGGGACATGACATAGATGGAATTCAGGTTAAGCCAAATTCTAAGCACATTTGGATAGATCGTTGCACCCTGAGAGATTACGATGATGGACTGATTGACATTACCAGAGGAAGCACGGATATCACTATATCTAGGTGCCACTTTTCTCAGCATGACAAAACAATGCTCATCGGAGCTGACCCATCTCATATTGATGATAGATGTATTCGGGTAACCATTCATCATTGTTTCTTTGATGGAACACGACAGAGGCATCCTCGTTTAAGATTCGGGAAAGTGCATCTGTATAATAATTACACTAGAAACTGGGGTATCTATGCTGTCTGTGCCAGTGTTGAATCACAGATATATTCTCAGTGCAATATTTATGAAGCTGGGCAGAAGAAAGTAGCTTTCATGCACTACACAGAGAAGGCCGCTGATAAAGAGGAGGCAGCATGTGGCTGGATTAAATCTGAAGGGGACCTGTTTCTCAATGCAGCTGAACCAGGATTACGCGTTCCTCCCTGTGAAGATAGTGTGTTTCATCCTAGCGAATTCTATGATGCCTGGACAGTGGAACCACCATCTGAATCTCTTAAGCATGTTCTTCAGCACTGTACAGGGTGGCAAAATACTCCTCGTGTCCTTGATAAAGGCATCGATGCTCAGTCGTTGCAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_28417.p1 GENE.R_Transcript_28417~~R_Transcript_28417.p1 ORF type:complete len:387 (+),score=47.89,Pec_lyase_C|PF00544.15|2.3e-27 R_Transcript_28417:141-1301(+)
MGNSKSQLQGHRKYRPNQHQYPLPPNPPNPFPSYIYPPQPQPQPQSTSNSMALTLPYSHVDSSLRALASQAEGFGRFAIGGLHGPVFHVSTLADDGPGSLREACRKKEPLWIVFEVSGLIHLRSYLNVSSYKTIDGRGQRIKFTGKGLRLKECEHVIICNLEFEGGRGHDIDGIQVKPNSKHIWIDRCTLRDYDDGLIDITRGSTDITISRCHFSQHDKTMLIGADPSHIDDRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKVAFMHYTEKAADKEEAACGWIKSEGDLFLNAAEPGLRVPPCEDSVFHPSEFYDAWTVEPPSESLKHVLQHCTGWQNTPRVLDKGIDAQSLQ*

Click here to download the sequence:
Link to NCBI Protein BLAST