Transcript Information: R_Transcript_28452.p1


Annotated TAIR IDAT3G06480.1
Annotated Gene NameDEAD box RNA helicase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:1985697-1989666 | Reverse length=1088
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.728030039514
Replicate 211.162590094741
Replicate 314.497935187438
Condition 2: 8 Hour
Replicate 119.361397008919
Replicate 220.605977190358
Replicate 324.385961272284
Condition 3: 24 Hour
Replicate 126.445069085077
Replicate 218.798153147243
Replicate 323.291473088757


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_28452.p1 GENE.R_Transcript_28452~~R_Transcript_28452.p1 ORF type:complete len:1185 (+),score=297.47,DEAD|PF00270.25|1.2e-48,DEAD|PF00270.25|3e+02,Helicase_C|PF00271.27|3.8e+02,Helicase_C|PF00271.27|2e-32,ResIII|PF04851.11|2.7e-07,ResIII|PF04851.11|6.2e+03,WW|PF00397.22|6.2e-07 R_Transcript_28452:169-3723(+)
ATGGCGGCAAATGTGGAAGCAGCAGCTTCGGCTGCTGCTGGTGGTCCACAGTATCTACCTGATGATCCGAGTCTTCCGAAGCCCTGGAAAGGATTGATTGATGGGAATACGGGGTATACGTATTACTGGAACCCGGAGACAAATGTCACTCAATATGAAAAGCCAGGTATTACTGCGCCCCCAGCAATGCCGTTGCCATCTGGTGTGTCTCCTACACATACAGCATCTCAGACAGGTCCACAAACTCCTGAACGCTCACAGTATCAGCAGCAGCATCAGTATATGAATCAGTTATCTCAGCAGCAACAACAAGGGCAGTTTCAAGTCCCGTTAACTGGACAGGCTGCTCAGCAGCAACAGCCAGCTCAAATGCCACAGGTTTCTGCAGCTGGGCAGCAAGGTCCTCACATGCGAGCCTTCCAGCACCAATTTGCACAATATGGACAAGGTATGCCTCAAAGAGGCTCCCAAGCCCCAGTGCAACAGGGGCAGATGATGCCACAGCAGTATATGCCACCTCAAACTGGCCAACAAATGTTGCCCCAACAAGGTTCACAGATGGGACAACAGCCTGCTCAGCATATGTCTCCCTTGGTGGGGTCACAAGCACCTCAGCACCAAGGCCCTCCTTCTCAAGTGGGACAATCCCAGGGCCATCCGTTTATGCCTCAGCATGTGCCATATGGTGGTGGTTATCAGCAGCCCATGATGCCACAGGGCGGCCAGCAAAATGCACCACCTTATTCTCAGCACATGCCTCAAGGACCTCCATTCTCATACCAGCAAGAAAATAGAAATGGAATTCCCCCACGAGATGATGCTGATTTCTCTAAAATGAAACAAACGGGGAGTTCAGTGTCTCAGTATGAGCAGAGTGGCCACGCCATCGGCCAAGGTCCACCATCTATGAATCTACCCAATCATTCAGTACAAGCTGGTCCGCTTTCTGGATCTTTTGGATCCTCCGTACATATGCATCAGCCTGCATCAAGTATTAATTTGCAGGAGAAACACAACGATGCTATCCACCCCCAACAGACTTCTGTGTATCCAAACCAAATGAAGCAACCCATGATGCATGCTCAGCAGCATGCCCCTCCCATTGGATCGAAGATGGGCTATGATGAAAACCAGCAGGGAAGAGCTGGTCAAGGATACAACTTCAATTCTAGTAATGATGTCCCCGTAATGACTCCTCAACACCCTAAACTTGCTGTGATACCTACACCAAGGAAGCAGCAGGACATGATGATGGGTGGTTTCCCACATCAAAGTGCTGCACCTAGTCGTGATGCTGCTTTGAATCCGGTAGCTGCACCTGGCATGCATAGCATGTACAAGCATGGAAATGTGGATATGCCAATGTCCAACCACAATCTGTTGAGGCCTCCTCCTATGGTGCCTGGTTCAGCAGATGTTATGAGTATTTCATCAGCAGAGGCGTATCGTCAACAACATGAAGTAACAGCTACGGGTGAAAATGTTCCTGCTCCATTCATGACCTTTGAAGCCACTGGTTTTCCTCCGGAGTTACTGAGAGAGATACATTCTGCTGGCTTCTCTTCACCAACTCCAATTCAAGCACAAACTTGGCCTATCGCACTGCAAAACAGAGATATTGTGGCAATTGCAAAGACAGGTTCGGGGAAGACTTTGGGCTACTTGATGCCTGCCTTCATCCATCTGAGTCGTCGAAGGAATAATCCCCGGCATGGTCCAACAGTTTTGGTCTTGGCTCCAACTCGTGAGCTTGCCTCTCAAATTCAAGATGAGGCTGTTAAATTTGGAAGATCATCAAGGGTTTCTTGCACGTGCTTATACGGTGGAGCTCCAAAGGGACCTCAGCTGGAGGAATTGCGTCGTGGAGCCGATATAGTAGTGGCAACTCCTGGCCGTCTCAATGATATTCTTGAAACACGGAATATTGATGTTCGGCAAGTTTCTTTGCTTGTTCTGGATGAGGCAGATCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAGGTTGTGAATGAGATACCCGCACACAGGCAGACTCTTATGTACACAGCAACTTGGCCCAAAGAAGTCAGGAAAATAGCAAGCGATTTGCTTAATAGTCCTGTACAAGTGAACATTGGCAGTGTTGATGAACTCGTTGCAAACAAATCCATTACACAGCTTGTTGAAATTGTACCACAAATGGAGAAGCAAAGGCGCTTGGAGCAAATTCTTAGAGCCCAAGAGAGGGGTTCTAAAGTTATCATTTTCTGTTCCACCAAGAAAATGTGTGATGAGCTTACACGTAGTATTAGACGCAACTTTGCTGCTGCTGCAATTCATGGAGACAAGAATCAAGGGGAGAGAGACTATGTGTTGAATCAATTCCGTTCTGGGAAATCGCCAATTTTAGTAGCAACAGATGTTGCTGCCAGAGGCCTTGATGTAAAGGACATAAGGGTGGTGATCAATTATGATTTTCCAACTGGCATTGAAGATTATGTCCATCGTATTGGAAGAACCGGAAGGGCTGGGGCAACTGGGGTGGCATACACATTCATTTCAGAACAGGATTGGAAGCATGCTGGTGATCTGGTTAAAGTACTGGAGGGGGCTAACCAACAAGTTCCTCCAGAAGTGAGAGAAATGGCTCTAAGAGGTGGTCCAGCTTTTGGTAGGGATCGCATGAACCGATTTGACTCTGGCCCTGCTAGTGGTGGACGATGGGATTCTGGTGGGCGAAGTGGAGGGCGGGAGGGTGGCTTTAGTGGCCGTGGTGGCATGCGAGATGGTGGGTTTGGGGGTCGTGGCCCCATGAGGGATGGTGGATTTGGCTTCGGAGGTCGTGGCATGAGAGATGGGGGCTTTGGAGGTCGTGGCATGAGAGATGGTAATATTAGTGGCCGTGGAGGACGAAGTGATTTCGGTGGCCGTGGAAATAGGGGAAGAGGATTTGGTGGTCCAGGTGGCGGTTATGGATCACGGCCTAGAGATGATTACAACTCCCAAGAGAGGTTCGGTAATAGAGATGGATTTGGCCGTGGCCGTGGTAGGGGGCGATTTGAGAGTAGGAGAGATGTGGCAGGGAGGAGCAGAGGAAGAAGTTACAGTTCTAGCCCTGAGAAAGTTCGAACCTGGGGTTATAGCAGAAGTATGAGCCGGAGCCGAAGTCGTTCTCGGAGTAGAAGTAGAAGCTGGAGCCGCAGTCCCCGCCGAAGTTACAGCCGCAGTCGCAGTCCCCGTCGAAGTTACAGTCGTAGTCCCCGTCGTAGCCGAAGCCGCAGCAACGATAGGTACCGTGGTCGTAGCCGAAGCCGCAGTCATGACAGGTATGGGAGGCCTGACAGGCGAGATTCAGATCAGAAAGATCTCTCTAGATCTGAAGTTGAGAAGCAATCAGACATGGACACCTTCAAGCCTAAGGATGGTATAGTGCCTGGTTCGGCTGGTCCTACAGATCTTCCAACATCTCTCATGGGCCCAGGTCCGAATGACTCGATACCTGGAGATAATCTTGTGGCAAATTTGGAGGACGAAACAGAGCCTGTTTCCTTAGGGGTGGAGGATCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_28452.p1 GENE.R_Transcript_28452~~R_Transcript_28452.p1 ORF type:complete len:1185 (+),score=297.47,DEAD|PF00270.25|1.2e-48,DEAD|PF00270.25|3e+02,Helicase_C|PF00271.27|3.8e+02,Helicase_C|PF00271.27|2e-32,ResIII|PF04851.11|2.7e-07,ResIII|PF04851.11|6.2e+03,WW|PF00397.22|6.2e-07 R_Transcript_28452:169-3723(+)
MAANVEAAASAAAGGPQYLPDDPSLPKPWKGLIDGNTGYTYYWNPETNVTQYEKPGITAPPAMPLPSGVSPTHTASQTGPQTPERSQYQQQHQYMNQLSQQQQQGQFQVPLTGQAAQQQQPAQMPQVSAAGQQGPHMRAFQHQFAQYGQGMPQRGSQAPVQQGQMMPQQYMPPQTGQQMLPQQGSQMGQQPAQHMSPLVGSQAPQHQGPPSQVGQSQGHPFMPQHVPYGGGYQQPMMPQGGQQNAPPYSQHMPQGPPFSYQQENRNGIPPRDDADFSKMKQTGSSVSQYEQSGHAIGQGPPSMNLPNHSVQAGPLSGSFGSSVHMHQPASSINLQEKHNDAIHPQQTSVYPNQMKQPMMHAQQHAPPIGSKMGYDENQQGRAGQGYNFNSSNDVPVMTPQHPKLAVIPTPRKQQDMMMGGFPHQSAAPSRDAALNPVAAPGMHSMYKHGNVDMPMSNHNLLRPPPMVPGSADVMSISSAEAYRQQHEVTATGENVPAPFMTFEATGFPPELLREIHSAGFSSPTPIQAQTWPIALQNRDIVAIAKTGSGKTLGYLMPAFIHLSRRRNNPRHGPTVLVLAPTRELASQIQDEAVKFGRSSRVSCTCLYGGAPKGPQLEELRRGADIVVATPGRLNDILETRNIDVRQVSLLVLDEADRMLDMGFEPQIRKVVNEIPAHRQTLMYTATWPKEVRKIASDLLNSPVQVNIGSVDELVANKSITQLVEIVPQMEKQRRLEQILRAQERGSKVIIFCSTKKMCDELTRSIRRNFAAAAIHGDKNQGERDYVLNQFRSGKSPILVATDVAARGLDVKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFISEQDWKHAGDLVKVLEGANQQVPPEVREMALRGGPAFGRDRMNRFDSGPASGGRWDSGGRSGGREGGFSGRGGMRDGGFGGRGPMRDGGFGFGGRGMRDGGFGGRGMRDGNISGRGGRSDFGGRGNRGRGFGGPGGGYGSRPRDDYNSQERFGNRDGFGRGRGRGRFESRRDVAGRSRGRSYSSSPEKVRTWGYSRSMSRSRSRSRSRSRSWSRSPRRSYSRSRSPRRSYSRSPRRSRSRSNDRYRGRSRSRSHDRYGRPDRRDSDQKDLSRSEVEKQSDMDTFKPKDGIVPGSAGPTDLPTSLMGPGPNDSIPGDNLVANLEDETEPVSLGVEDQ*

Click here to download the sequence:
Link to NCBI Protein BLAST