Transcript Information: R_Transcript_284632.p1


Annotated TAIR IDAT1G45474.1
Annotated Gene Namephotosystem I light harvesting complex gene 5
Annotated Gene Symbol(s)LHCA5
Annotation TypeOrtholog
Chromosome Positionchr1:17179353-17180439 | Forward length=256
E-Value3.8E-129
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1108866410219
Replicate 20.71415987810538
Replicate 31.0907970283882
Condition 2: 8 Hour
Replicate 10.49971152953562
Replicate 20.38028710614261
Replicate 30.37044103306912
Condition 3: 24 Hour
Replicate 11.093228915605
Replicate 20.75017887382916
Replicate 30.89337570150601


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_284632.p1 GENE.R_Transcript_284632~~R_Transcript_284632.p1 ORF type:complete len:294 (+),score=50.41,Chloroa_b-bind|PF00504.17|4.7e-48 R_Transcript_284632:74-883(+)
ATGGCATCAACTACTATAGTGGGGAAAGTTTCTCTTGTACCTGAGCTACCTTGTACCTCTACTCGTTCATCCTTCCTCACGAACACCAACTTTCATACATCATCATCATCTTCTTCTTCTTCTTGTTTTTCACGGGCTAAGGCATTTGGTTCAACGCGATTAGTTGCGCTTCATGCTCAAGCTCGCCCTACTTGGCTTCCTGGTCTCGATCCTCCACCACACCTTGATGGAAGTTTGGCTGGGGATTTTGGATTTGACCCTCTTGGACTCGGGGAGGATCCGGAGAGCTTAAGATGGTATGTCCAAGCAGAGCTGGTTCACGCCCGCTTTGCTATGGCAGGAGTTGCTGGCATTCTTTTCACTGACTTACTACGTACGACCGGAATTAGAGATTTACCAGTTTGGTATGAAGCAGGAGCAACAAAATTCGACTTTGCTAGCACAACCACCCTGTTGATCATCCAATTAATCTTAATGGGATTTGTGGAAATTAAAAGGTTCATGGATTTCAAAAGTCCTGGATCACAAGCTAAGGATGGTTCCTTCTTTGGTCTTGAAGCTGCATTCGAAGGCCTCGAACCAGGGTATCCCGGAGGTCCATTGCTAAATCCCCTTGGCCTAGCCAAAGATATCAAGAACGCCCAGGATTTGAAGCTCAAGGAAATTAAGAATGGAAGGCTAGCAATGGTAGCAATGCTTGGCATATTTGTGCAAGCTTCTGTGACTCATGCTGGCCCCATTGAGAACCTTCTGGAGCACCTTTCTGATCCATGGCACAAGACGATAATTCAGATGATGTCTACCAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_284632.p1 GENE.R_Transcript_284632~~R_Transcript_284632.p1 ORF type:complete len:294 (+),score=50.41,Chloroa_b-bind|PF00504.17|4.7e-48 R_Transcript_284632:74-883(+)
MASTTIVGKVSLVPELPCTSTRSSFLTNTNFHTSSSSSSSSCFSRAKAFGSTRLVALHAQARPTWLPGLDPPPHLDGSLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMAGVAGILFTDLLRTTGIRDLPVWYEAGATKFDFASTTTLLIIQLILMGFVEIKRFMDFKSPGSQAKDGSFFGLEAAFEGLEPGYPGGPLLNPLGLAKDIKNAQDLKLKEIKNGRLAMVAMLGIFVQASVTHAGPIENLLEHLSDPWHKTIIQMMSTN*

Click here to download the sequence:
Link to NCBI Protein BLAST