Transcript Information: R_Transcript_28532.p1


Annotated TAIR IDAT5G15020.1
Annotated Gene NameSIN3-like 2
Annotated Gene Symbol(s)SNL2
Annotation TypeOrtholog
Chromosome Positionchr5:4859408-4865569 | Reverse length=1367
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 128.553608511037
Replicate 214.826334943088
Replicate 320.646204280743
Condition 2: 8 Hour
Replicate 117.469447506222
Replicate 223.031054469467
Replicate 330.544596234014
Condition 3: 24 Hour
Replicate 124.098984779958
Replicate 216.863889473351
Replicate 324.863664534677


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_28532.p1 GENE.R_Transcript_28532~~R_Transcript_28532.p1 ORF type:complete len:1368 (+),score=361.76,Sin3a_C|PF16879.1|3.4e+02,Sin3a_C|PF16879.1|7.6e+03,Sin3a_C|PF16879.1|9.3e-55,PAH|PF02671.17|1.6e-15,PAH|PF02671.17|7.2e-18,PAH|PF02671.17|8.6e-12,PAH|PF02671.17|2.3e+03,Sin3_corepress|PF08295.8|6.5e-34 R_Transcript_28532:440-4543(+)
ATGAAGAGATTAAGAGATGAGAGCTATACTGGCTCTCAATTCAAACGCCCTTTTGGCACTTCTCGAGGAGAATCATATGGGCAACCTCAGAACACAGTGGGAGGTGCCGGTGGAGGTGGTGGCGGCGGCGGCGGCGGAGGACAGAAATTGACAACTGATGATGCCCTTCAGTATCTTAAGGAAGTGAAGGAGATGTTTCAGGACCAAAGGGAGAAATATGATCAATTCCTTGAGGTCATGAAAGACTTTAAGGCTCAAAGAATTGATACAGAAGGTGTCATAGCCCGGGTGAAGGAATTATTTAAAGGGCATAACAACCTGATCTATGGATTTAATACCTTTTTGCCAAAGGGTTATGAGATCACCCTAGATGACGAGGAGCCTCCTCCAAAGAAAGCAGTAGAATTTGAAGAGGCTATCAATTTTGTTAACAAGATAAAGAAACGCTTCCAAAGTGACGATCAAGTATATAAATCTTTCCTTGACATATTAAATATGTACCGTAAAGAGCATAAGACCATCAGTGAAGTTTATGTTGAGGTTTCACAGCTTTTTGATGATCACCCAGATCTGCTTGACGAGTTCACTCGATTCTTGCCGGATAATTCATCAGCAGCAACTGTTCATCATTCTCAGCATGGTCGAATCACCTTTCCACGTTATGAAGAAAGAAGCTCCGCTGTGCCTCCATCCCGACAACAGCCTATGGACAAGCGATGGCGTAGAGACAGAGTTGGTACTTCCCATGCTGAGCATGATCTTAGCACTGAGCGTCCTGAAATGGATGATGATAGAGCTGCAAAGGTGCACAAGGATCAGAAGAAGCGAGATAAAGACAATCGTGATCGAAGGAACAGGGATCTGGATGATAGGGAACCTGAGCATGATAATAATAGGGATTTCAACATCCAACGCCTTCCGGACAAAAGGAAGCCTGCCCGCAAAGTTGAAGGTTTTGGACCAAATCCTGCTATGGCATCTTCTGATGATAAAAGGGCCTTGAAAAGCATGTACAACCAAGAATACCTTTTCTGTGAGAAGGTCAAGGGAAAACTGGGGAACTCAGATGATTATCAGGCATTCTTGAAATGTCTGCACATTTATAGCACAGAAATAATAACCAGAAGTGAATTGCAAAGTTTGGTTGCTGACCTATTGGGGAAGTATCCAGATCTCATGGAAGGGTTCAATGAATTCTTGGAACATTGTGAGAATATGGATGGATTCCTTGCTGGTGTTATGGGCAAGAAGTCTGTGTGGAATGATGGACATTTGCCACGATCATTGAAGACAGATGACAAAGAGAAAGCACCCAAGCGTGAACTGGAGCCGGCTAAAGAGAAGCCAAATAGGGATTATACTTCTAAGTCCATTCAGGAACTTGATCTTTCTAATTGTGAACGCTGCACTTCTAGCTATCGGCTTTTACCTAATGACTATCCAATACCTACTGCAAGCCAGCGATCGGAAATTGGTGCCCAAGTGTTGAATGACTACTGGGTTTCTGTGACGTCTGGGAGTGAGGATTACTCCTTTAAACACATGCGGAGGAACCAATATGAAGAAAGTCTTTTCAGATGTGAAGATGACAGATTTGAGTTGGACATGCTATTGGAGTCAGTGAGCTCAACTGCCAAGCGAGCTGAAGACTTGCTAAATAACATCAATAATAACAGCATTGGAGCAGATGGTCCTATTCGCATTGAAGACTACTTTACACCTCTTAATATAAGGTGCATTGAGCGTCTCTATGGTGACCATGGTTTGGACGTTATGGACATATTGCGTAAAAGTCCTGCTCTTGCATTGCCAGTCATCTTAACTCGCCTGAAGCAGAAACAAGAAGAGTGGACGAAGTGTCGTACAGATTTTAACAAGGTTTGGGCTGAAATTTATGCAAAGAACCACTACAAGTCACTTGATCATAGGAGCTTCTATTTCAAGCAGCAAGATTCCAAGAACTTGAGCACTAAGTTCTTGGTCGCAGAGATAAAAGAAATTAAAGAGAACATGCAGAAAGAAGATGACATGCTTCTGGCGGTTGCTGCTGGAAACAAAAGGCCTTTGGTTCCTCATTTGCAATTCGAGTACCCGGACAGCGACATTCATGAGGACGTGTATAAACTAATAAAATATTCTTGTGAGGAGGTCTGTACAACCAAAGAGCAGTTGAACAAAGTCATGAGGCTATGGACCACCTTTCTGGAGCCTATGCTGGGAGTGACATCACGGGCGCATGGGGGTGACAGTGTTGAAGATGGTAAAGCTCGACAACGGACTTCAAGAAATGGTGGAGGACTCATAGCAGAAAGGGGTGAAAGCCCTGGTTCTGATGCTGCTAATACTAACCACGAGAAATTGGTGAACGGAGAAGAGAACTCACAGGATGATTTCTCCAAATTTTCCAGGACTAATGGTGACACTATAGCTAGAGAGGGTAGTTTCCGTGAGTCAGATGCAGTATGTAAAGAAAGCTTATCAACTAATCCCCAGCCCAAGACTCAGGATGAAGTAGGTGCTGCTGATAGAGCACCAGAGCGACTTCTTGGTTCCACTGCATCACCACAAAATGGTGGACAAAGCCACCATGCTAGAAGCAAAGTAGAACCAACATCAGGTCCTCAATCATCTCCGTCAAGGCCACATAATGCTGCTGAGGATGGTCGCGGGCCTGCTGCCATTCAGTCAATATCAGGGGCTCCTGATGTTTCGGCTGCTACATTGGCCAATGGAAACCTCACACAAAGTTCCAAGGCAAATCGTTATGTTGAAGAATCTGTTGGGCATTCCAAAGGTGAAAAGGAAGAGGGGGAGTTGTCACCTAATGGGGATGTTGATGAGGACAACTCTGTTGCATATGCAGATGCAGGTGCCCAAGCTGGTCCCCAAGCAAACCTTACTGCAGAAAACCAGCAATATCGAGATACCAATGGTGAGGATGCTGGGGCAGGCAATGATGCAGACGCAGATGATGAGGACAGTGAAAATGCTTCTGAGGCTGGTGATGATGTTTCAGGCAGTGAATCAGCTGGTGATGAGTGTTCTCGTGAAGACCACGAGGAAGAGGAAGATGTTGAGCGTGATGAGCTTGAAGTTAAGGCTGAGAGTGAAGGTGAAGCTGAGGTACACTATTCGGGCAGTGATGGAACCACCTTACCGTTATCAGAACGTTTCTTGTTGTCGGTGAAGCCACTTGTGAAGTATGTTTCTTCCATTTCACGGGACACTGAGAAAAAAGATTCTAGAATTTTCTATGGAAATGACAACTTTTACGGTCTTTTCAGGCTTCATCGAACATTGTATGAAAGGATACTTACAGCAAAAATAAGCTCGAGATCTTCTGAAACAAAATGGAGAAATTCAAAGGATGCCAGCAATTTGGATCCTTATGCAAGTTTTATGAGTGCCCTTTATTACTTGCTTGACGGTTCATCTGATAATGCAAAGTTTGAGGATGATTGCCGAGCTGTTATTGGAAATCAATCATATGTGTTGTTTACATTGGACAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCAACTGATGAGTTGGACAATAAGCTTCTCCAACTATATGAATATGAAAAGTCTCGTAAACCTGGAAAATTTGTTGACTCAGTCTACCATGAAAATGCCCGTGTTCTACTTCATGATGACAACATATATCGATTCGAATTTTATTCTTCCCCTACGCACATGTCAATCCAGCTGATGGATAATGGAAATGAGAAGCCCGAGATGGTGGCTGTTTCTATAGAGCCGAATTTTGCAGCTTATGTGTACAACGATTTTCTTTCAGTCACCTCCAGCAGAAAGGAGCCTCAAGGAATCATGCTGCAAAGGAGCAAACGAAAGTACATGGGTCTTGATGAATATTCAGCTACATCAAAAGCCATGGAAGGCGTCCAAATATTTAATGGCTTGGAATGTAAAATAGCTTGCAGCTCATCCAAGATATCTTATGTTCTAGACACTGAAGATTACCTTTCTCGAATGAAGAAGATGAGGAAAAGTTTGCCTGCAGAACTGCGTGTTGAGCTTAATCAGGCAAGAGTACAGAGATTTCACAAGTTTTTGTCAGTAGCATGCAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_28532.p1 GENE.R_Transcript_28532~~R_Transcript_28532.p1 ORF type:complete len:1368 (+),score=361.76,Sin3a_C|PF16879.1|3.4e+02,Sin3a_C|PF16879.1|7.6e+03,Sin3a_C|PF16879.1|9.3e-55,PAH|PF02671.17|1.6e-15,PAH|PF02671.17|7.2e-18,PAH|PF02671.17|8.6e-12,PAH|PF02671.17|2.3e+03,Sin3_corepress|PF08295.8|6.5e-34 R_Transcript_28532:440-4543(+)
MKRLRDESYTGSQFKRPFGTSRGESYGQPQNTVGGAGGGGGGGGGGGQKLTTDDALQYLKEVKEMFQDQREKYDQFLEVMKDFKAQRIDTEGVIARVKELFKGHNNLIYGFNTFLPKGYEITLDDEEPPPKKAVEFEEAINFVNKIKKRFQSDDQVYKSFLDILNMYRKEHKTISEVYVEVSQLFDDHPDLLDEFTRFLPDNSSAATVHHSQHGRITFPRYEERSSAVPPSRQQPMDKRWRRDRVGTSHAEHDLSTERPEMDDDRAAKVHKDQKKRDKDNRDRRNRDLDDREPEHDNNRDFNIQRLPDKRKPARKVEGFGPNPAMASSDDKRALKSMYNQEYLFCEKVKGKLGNSDDYQAFLKCLHIYSTEIITRSELQSLVADLLGKYPDLMEGFNEFLEHCENMDGFLAGVMGKKSVWNDGHLPRSLKTDDKEKAPKRELEPAKEKPNRDYTSKSIQELDLSNCERCTSSYRLLPNDYPIPTASQRSEIGAQVLNDYWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEDLLNNINNNSIGADGPIRIEDYFTPLNIRCIERLYGDHGLDVMDILRKSPALALPVILTRLKQKQEEWTKCRTDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKFLVAEIKEIKENMQKEDDMLLAVAAGNKRPLVPHLQFEYPDSDIHEDVYKLIKYSCEEVCTTKEQLNKVMRLWTTFLEPMLGVTSRAHGGDSVEDGKARQRTSRNGGGLIAERGESPGSDAANTNHEKLVNGEENSQDDFSKFSRTNGDTIAREGSFRESDAVCKESLSTNPQPKTQDEVGAADRAPERLLGSTASPQNGGQSHHARSKVEPTSGPQSSPSRPHNAAEDGRGPAAIQSISGAPDVSAATLANGNLTQSSKANRYVEESVGHSKGEKEEGELSPNGDVDEDNSVAYADAGAQAGPQANLTAENQQYRDTNGEDAGAGNDADADDEDSENASEAGDDVSGSESAGDECSREDHEEEEDVERDELEVKAESEGEAEVHYSGSDGTTLPLSERFLLSVKPLVKYVSSISRDTEKKDSRIFYGNDNFYGLFRLHRTLYERILTAKISSRSSETKWRNSKDASNLDPYASFMSALYYLLDGSSDNAKFEDDCRAVIGNQSYVLFTLDKLIYKLVKQLQAVATDELDNKLLQLYEYEKSRKPGKFVDSVYHENARVLLHDDNIYRFEFYSSPTHMSIQLMDNGNEKPEMVAVSIEPNFAAYVYNDFLSVTSSRKEPQGIMLQRSKRKYMGLDEYSATSKAMEGVQIFNGLECKIACSSSKISYVLDTEDYLSRMKKMRKSLPAELRVELNQARVQRFHKFLSVACR*

Click here to download the sequence:
Link to NCBI Protein BLAST