Transcript Information: R_Transcript_28650.p1


Annotated TAIR IDAT1G60900.1
Annotated Gene NameU2 snRNP auxilliary factor, large subunit, splicing factor
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:22424008-22427806 | Forward length=589
E-Value2E-221
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 138.489939404516
Replicate 237.028801549395
Replicate 339.713311375938
Condition 2: 8 Hour
Replicate 139.523379833325
Replicate 246.970004519664
Replicate 346.957427474479
Condition 3: 24 Hour
Replicate 146.165155838318
Replicate 237.697711527644
Replicate 341.812653246981


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_28650.p1 GENE.R_Transcript_28650~~R_Transcript_28650.p1 ORF type:complete len:368 (+),score=95.80,RRM_1|PF00076.18|0.15,RRM_1|PF00076.18|0.00031,RRM_1|PF00076.18|3.8e-16,RRM_1|PF00076.18|0.00034,RRM_6|PF14259.2|5e-06,RRM_6|PF14259.2|0.00012,RRM_6|PF14259.2|0.72,RRM_5|PF13893.2|0.00027,RRM_5|PF13893.2|5.5,RRM_5|PF13893.2|0.03,RRM_7|PF16367.1|1.2,RRM_7|PF16367.1|0.0004,RRM_7|PF16367.1|3.8e+03 R_Transcript_28650:790-1893(+)
ATGTTTCCCAACATATTACCATTGGCTTCACCACAGCTTGGAGCTCTTCCTGTCATGCCTGTTCAGGCGATGACGCAACAGGCTACTAGGCATGCTCGAAGGGTTTATGTCGGAGGACTTCCCCCCACAGCTAATGAGCAGTCTGTGGCCACCTTTTTCAGCCATGTTATGGCCACAATTGGGGGAAATACTGCAGGTCCAGGTGATGCTGTTGTTAATGTCTACATAAATCACGAAAAGAAGTTTGCTTTTGTGGAGATGAGATCCGTGGAAGAGGCTAGTAATGCAATGGCACTAGATGGTATCATATTTGAGGGAACACCTGTTAAGGTGAGAAGACCCAGCGACTACAACCCATCACTGGCTGCAGCACTTGGTCCAAGTCAACCTAATCCCAACTTGAACTTGGCTGCTGTTGGTTTGACACCAGGGTCTGCAGGTGGTCTTGAGGGTCCTGACAGAATATTTGTGGGCGGGCTTCCTTACTACTTTACTGAGGCTCAGGTCCGAGAGTTGTTAGAATCTTTTGGAGCTCTTCGGGGCTTTGACCTTGTCAAGGACAGAGAAACTGGGAACTCAAAAGGCTATGCGTTTTGTGTTTACCAAGATCTATCTGTGACAGACATTGTTTGTCAAGCACTTAATGGAATCAAAATGGGGGATAAAACCCTTACTGTTAGGCGTGCAAACCAGGGTGCTCAACAACCCAAGCCAGAGCAAGAGCATGTATATATGCATGCTCAGCAGCAGATAGCACTGCAGAAAATGATATTGCAACCCGGTGGTCTTCCGACCAAAGTTGTGTGCTTAACCAACTGTGTGAATCCTGATGAACTGAGTGATGATCAGGAGTTTGAAGATATATTGGATGACATGAGACAAGAGGGAGAAAAATTTGGCTCGTTGGTAAATATCGCCATACCACGCCCACAATCAAATGGAGAACCGTCTCCTGGGCTTGGGAAGGTGTTCTTGGAATATGGTGATGTGGAGAGTGCTTCAAGGGCCAGAGCTGGAATGCATGGAAGAAAGTTCGGCGGCAACCAAGTTGTGGCTATATATTACCCGGAAAATAAATTTGCGGAGGGTCAGTATGATGGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_28650.p1 GENE.R_Transcript_28650~~R_Transcript_28650.p1 ORF type:complete len:368 (+),score=95.80,RRM_1|PF00076.18|0.15,RRM_1|PF00076.18|0.00031,RRM_1|PF00076.18|3.8e-16,RRM_1|PF00076.18|0.00034,RRM_6|PF14259.2|5e-06,RRM_6|PF14259.2|0.00012,RRM_6|PF14259.2|0.72,RRM_5|PF13893.2|0.00027,RRM_5|PF13893.2|5.5,RRM_5|PF13893.2|0.03,RRM_7|PF16367.1|1.2,RRM_7|PF16367.1|0.0004,RRM_7|PF16367.1|3.8e+03 R_Transcript_28650:790-1893(+)
MFPNILPLASPQLGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMATIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGTPVKVRRPSDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGALRGFDLVKDRETGNSKGYAFCVYQDLSVTDIVCQALNGIKMGDKTLTVRRANQGAQQPKPEQEHVYMHAQQQIALQKMILQPGGLPTKVVCLTNCVNPDELSDDQEFEDILDDMRQEGEKFGSLVNIAIPRPQSNGEPSPGLGKVFLEYGDVESASRARAGMHGRKFGGNQVVAIYYPENKFAEGQYDG*

Click here to download the sequence:
Link to NCBI Protein BLAST