Transcript Information: R_Transcript_28651.p1


Annotated TAIR IDAT1G60900.1
Annotated Gene NameU2 snRNP auxilliary factor, large subunit, splicing factor
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:22424008-22427806 | Forward length=589
E-Value6.1E-203
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.082709841531
Replicate 27.5144654121488
Replicate 312.297301235829
Condition 2: 8 Hour
Replicate 111.920750040106
Replicate 210.474307809818
Replicate 314.52128849631
Condition 3: 24 Hour
Replicate 117.762092960382
Replicate 29.982906655735
Replicate 312.095836800654


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_28651.p1 GENE.R_Transcript_28651~~R_Transcript_28651.p1 ORF type:3prime_partial len:380 (+),score=92.17,RRM_1|PF00076.18|0.16,RRM_1|PF00076.18|0.00032,RRM_1|PF00076.18|3.9e-16,RRM_1|PF00076.18|1.4e+02,RRM_6|PF14259.2|5.3e-06,RRM_6|PF14259.2|0.00013,RRM_6|PF14259.2|3.9e+02,RRM_7|PF16367.1|1.3,RRM_7|PF16367.1|0.00044,RRM_7|PF16367.1|3.7e+03,RRM_5|PF13893.2|0.00029,RRM_5|PF13893.2|5.7,RRM_5|PF13893.2|8.3e+03 R_Transcript_28651:864-2000(+)
ATGAAGAGTATTAGATATTCGCAAAATAAGGAGGCTGTGGGTATTTGGTTTAGATCTGGAGTATATTTGCGGTCTATATGGAACTATGACTTTGAACTCTATACAGGGCAAATTCCAGGTACCTCTCCTGCTATTCCTGGAATGTTTCCCAACATATTACCATTGGCTTCACCACAGCTTGGAGCTCTTCCTGTCATGCCTGTTCAGGCGATGACGCAACAGGCTACTAGGCATGCTCGAAGGGTTTATGTCGGAGGACTTCCCCCCACAGCTAATGAGCAGTCTGTGGCCACCTTTTTCAGCCATGTTATGGCCACAATTGGGGGAAATACTGCAGGTCCAGGTGATGCTGTTGTTAATGTCTACATAAATCACGAAAAGAAGTTTGCTTTTGTGGAGATGAGATCCGTGGAAGAGGCTAGTAATGCAATGGCACTAGATGGTATCATATTTGAGGGAACACCTGTTAAGGTGAGAAGACCCAGCGACTACAACCCATCACTGGCTGCAGCACTTGGTCCAAGTCAACCTAATCCCAACTTGAACTTGGCTGCTGTTGGTTTGACACCAGGGTCTGCAGGTGGTCTTGAGGGTCCTGACAGAATATTTGTGGGCGGGCTTCCTTACTACTTTACTGAGGCTCAGGTCCGAGAGTTGTTAGAATCTTTTGGAGCTCTTCGGGGCTTTGACCTTGTCAAGGACAGAGAAACTGGGAACTCAAAAGGCTATGCGTTTTGTGTTTACCAAGATCTATCTGTGACAGACATTGTTTGTCAAGCACTTAATGGAATCAAAATGGGGGATAAAACCCTTACTGTTAGGCGTGCAAACCAGGGTGCTCAACAACCCAAGCCAGAGCAAGAGCATGTATATATGCATGCTCAGCAGCAGATAGCACTGCAGAAAATGATATTGCAACCCGGTGGTCTTCCGACCAAAGTTGTGTGCTTAACCAACTGTGTGAATCCTGATGAACTGAGTGATGATCAGGAGTTTGAAGATATATTGGATGACATGAGACAAGAGGGAGAAAAATTTGGCTCGTTGGTAAATATCGCCATACCACGCCCACAATCAAATGGAGAACCGTCTCCTGGGCTTGGGAAGGTGTTCTTGGAATATGGTGATGTGGAGAGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_28651.p1 GENE.R_Transcript_28651~~R_Transcript_28651.p1 ORF type:3prime_partial len:380 (+),score=92.17,RRM_1|PF00076.18|0.16,RRM_1|PF00076.18|0.00032,RRM_1|PF00076.18|3.9e-16,RRM_1|PF00076.18|1.4e+02,RRM_6|PF14259.2|5.3e-06,RRM_6|PF14259.2|0.00013,RRM_6|PF14259.2|3.9e+02,RRM_7|PF16367.1|1.3,RRM_7|PF16367.1|0.00044,RRM_7|PF16367.1|3.7e+03,RRM_5|PF13893.2|0.00029,RRM_5|PF13893.2|5.7,RRM_5|PF13893.2|8.3e+03 R_Transcript_28651:864-2000(+)
MKSIRYSQNKEAVGIWFRSGVYLRSIWNYDFELYTGQIPGTSPAIPGMFPNILPLASPQLGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMATIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGTPVKVRRPSDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGALRGFDLVKDRETGNSKGYAFCVYQDLSVTDIVCQALNGIKMGDKTLTVRRANQGAQQPKPEQEHVYMHAQQQIALQKMILQPGGLPTKVVCLTNCVNPDELSDDQEFEDILDDMRQEGEKFGSLVNIAIPRPQSNGEPSPGLGKVFLEYGDVES

Click here to download the sequence:
Link to NCBI Protein BLAST