Transcript Information: R_Transcript_287268.p1


Annotated TAIR IDAT2G03820.1
Annotated Gene Namenonsense-mediated mRNA decay NMD3 family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:1165149-1166699 | Reverse length=516
E-Value7E-46
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0884287546958
Replicate 22.2353475728378
Replicate 32.4822890550964
Condition 2: 8 Hour
Replicate 12.653411220519
Replicate 22.9332715723228
Replicate 33.4163677783618
Condition 3: 24 Hour
Replicate 14.3646021345445
Replicate 23.4382722985311
Replicate 34.119548980994


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_287268.p1 GENE.R_Transcript_287268~~R_Transcript_287268.p1 ORF type:complete len:526 (+),score=72.58,NMD3|PF04981.9|1.5e-18 R_Transcript_287268:117-1694(+)
ATGCATTCAAAGATTGGTAATATCATTCACATGGACGATGATACGATTTCAACTGCCGCAACGCCACCCAAAAACAAGGCAATCAATTCCAACAGGAACAAACAATTTGCTCCTAATCTTAATTCAGTAAAGATTGCCAAAAAGAAGCCAAGCACACCCAGACGCCCTGGACTTAAACTCCATTACCCTTACCAATGTTATTGTGTTCCCTTAAAGCAACGTTTCCCTAAGATCACCAAGTGTGGATATTGTCAAACTCATGATCAACGCCCTGCAAGGGCATTACCACTGGCGCGTTCCATCTTCTGCTGTAGCGATTGCTCGTCTTATTCAGCGGACAGAAGAACTTGGATTCAAGCTGGACGAGAGTCAAAAGAGCTCTTAGATTTTCTCTTGAGAATTCTTAGACTCAATAGCTATGAGCTAATCAGGGAGAAACTGGATTTTATAGGTGCTTCCTTTGTGACGAAACAGCCTAATTCTCCGAATATGGACATCCGCTTAGCTTTTCGAAAGAGGAGTACACAACAGGAAATATTTCAGCGTATGAACATCCGTCTCCACCAACAAACTTGCAGAGTTTGCTTAAGAAAGGATCCCACTCCTGGATCATGGGGCACTATGGTGCAACTTAGGCAATATGGTTCTCACAATGAAAGTCGTCTCAAATTGGAACGTACCATCCTTAACGACTCCTTAGTTGCTGCTCTTATCATGAGGTTCAAACAAATGGATCATGGTTCATATTTCTTCTTTCGTACAGAGATAATGGCTATTCGCTTTTGCAACTATCTCTCTGTATTCTCTCCAATTAGGAAAGATGAAATTCAGAAGAATAATTCGTCGAGCTCTGAGAGTTGCATTACAGTTTGGGTATGCCCCATCTGCGTGCATGATCTAGTTTATCTGCCACCACAGGTTTCAACCTCACTTGGAAACCTCGGTCCCCTGATGATTTGTCGTAGGGTGAGAAGTAGAGTCAGGTTGAGGGATCCCTTTACTTTGAGGTCGTGCATTTTAAGTGCTGCTGATTATTGGAAAGCACCCTTTGAGCCTCTAATGACTACTAAGGATTTTGTTGAGTTTGTGGTGATGGATGTGGAAAATTCTCCAAGTGGAACGGACAATTCTTCAGTTCCTATCCAAGTTGCTCGAGTATCAGAGTTTGGCAAGATTGACAAGAGTTTTGCGTTGAGAAGTCATGTTCTTCGTCAGAATTTGAAGCGTGGGGACTTTGTTTTTGGTTATGACATCCGCGAGGCAAATATCAACAATATGGAAGTTGAGAAACTCAGGGATCCACAGAAACTTGATCTGGTTCTGGTCGCAAAGAAAGGGGATTGGATTCTTCGATGTGAAAAGGCTGCTGCAATGGAGGAGAAAAGTCCAGAGTATCAGTATCAAGATTTTCTGAAAGACTTGGAGAAAAATAGTGAGGCTATGTTCAACCTGTCGTTAGGTAGTGGAGATGATGAGAATCCAAGCCTAAAGTCGTACAGCGATTCTCTTAATTTGAAGTTCACAGCTCAATGTGACAAATCTACATCTTCAAATTTGAAGTTGACAGAACTAAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_287268.p1 GENE.R_Transcript_287268~~R_Transcript_287268.p1 ORF type:complete len:526 (+),score=72.58,NMD3|PF04981.9|1.5e-18 R_Transcript_287268:117-1694(+)
MHSKIGNIIHMDDDTISTAATPPKNKAINSNRNKQFAPNLNSVKIAKKKPSTPRRPGLKLHYPYQCYCVPLKQRFPKITKCGYCQTHDQRPARALPLARSIFCCSDCSSYSADRRTWIQAGRESKELLDFLLRILRLNSYELIREKLDFIGASFVTKQPNSPNMDIRLAFRKRSTQQEIFQRMNIRLHQQTCRVCLRKDPTPGSWGTMVQLRQYGSHNESRLKLERTILNDSLVAALIMRFKQMDHGSYFFFRTEIMAIRFCNYLSVFSPIRKDEIQKNNSSSSESCITVWVCPICVHDLVYLPPQVSTSLGNLGPLMICRRVRSRVRLRDPFTLRSCILSAADYWKAPFEPLMTTKDFVEFVVMDVENSPSGTDNSSVPIQVARVSEFGKIDKSFALRSHVLRQNLKRGDFVFGYDIREANINNMEVEKLRDPQKLDLVLVAKKGDWILRCEKAAAMEEKSPEYQYQDFLKDLEKNSEAMFNLSLGSGDDENPSLKSYSDSLNLKFTAQCDKSTSSNLKLTELN*

Click here to download the sequence:
Link to NCBI Protein BLAST