Transcript Information: R_Transcript_287508.p1


Annotated TAIR IDAT1G19150.1
Annotated Gene Namephotosystem I light harvesting complex gene 6
Annotated Gene Symbol(s)LHCA6, LHCA2*1
Annotation TypeOrtholog
Chromosome Positionchr1:6612806-6613799 | Forward length=270
E-Value4.2E-149
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.6444219051006
Replicate 20.22257562278761
Replicate 30.56659774972815
Condition 2: 8 Hour
Replicate 10.86522490979665
Replicate 20.15802743350661
Replicate 30.32069983428246
Condition 3: 24 Hour
Replicate 10.56786095616229
Replicate 20.77933776998506
Replicate 30.30936685069819


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_287508.p1 GENE.R_Transcript_287508~~R_Transcript_287508.p1 ORF type:5prime_partial len:283 (+),score=49.38,Chloroa_b-bind|PF00504.17|2e-49 R_Transcript_287508:3-851(+)
TGCTATAAGCTCCCCACAAAAAGGTATAGGAAGTACTATGTCAGTTCAGGGGATAAACATTTTGCCCCTCACGATATGGCTCTTGCTGTAGCTTCCACTGCACTTTCAAGCCTTCCATCTAGAGAAATTCCAGGGAAACTTTTTCAAGGAAGACTGAAAAAATGCAGCATTACAAGAGTGAAGGCTGGTAAAGAGGTGTCAAGTGTTTGTGAACCACTTCCTCCTGATAGGCCCCTGTGGTTCCCTGGTAGCACACCCCCTGAATGGCTAGACGGCAGTCTTCCAGGCGATTTTGGCTTCGACCCACTTGGATTAGGGTCTGACCCGGCGCTGCTAAGATGGTTTGCACAAGCAGAACTGATGCACAGCAGGTGGGCAATGCTGGCAGTAGCAGGGATCCTAATCCCTGAATGGCTTGAAAGCCTTGGCTTAATTGAAAATTTTGATTGGTACGATGCTGGGTCCCGCGAGTACTTTGCGGACCCCACCACCCTATTCGTGGTCCAAATGGCCTTAATGGGTTGGGTTGAGGGGCGAAGATGGGCTGACTACCTCAACCCAGGGAGTGTGGACATTGAGCCCAAGCTTCCCAACAGGAAGAACCCAAAGCCTGATGTGGGCTACCCTGGTGGGCTGTGGTTCGACCCAATGATGTGGGGCCGAGGATCGCCAGAGCCTGTGATGGTTATGAGGACTAAAGAGATTAAGAATGGGAGGCTTGCTATGTTAGCCTTTGCTGGGTTCTGTTTTCAGGCTGTTTATACAGGAGAAGGTCCTATTGAGAACCTCACCAAGCACATTGCTGATCCTGGTCACTACAACATATTTACGGCGTTTTCCTCGCATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_287508.p1 GENE.R_Transcript_287508~~R_Transcript_287508.p1 ORF type:5prime_partial len:283 (+),score=49.38,Chloroa_b-bind|PF00504.17|2e-49 R_Transcript_287508:3-851(+)
CYKLPTKRYRKYYVSSGDKHFAPHDMALAVASTALSSLPSREIPGKLFQGRLKKCSITRVKAGKEVSSVCEPLPPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPALLRWFAQAELMHSRWAMLAVAGILIPEWLESLGLIENFDWYDAGSREYFADPTTLFVVQMALMGWVEGRRWADYLNPGSVDIEPKLPNRKNPKPDVGYPGGLWFDPMMWGRGSPEPVMVMRTKEIKNGRLAMLAFAGFCFQAVYTGEGPIENLTKHIADPGHYNIFTAFSSH*

Click here to download the sequence:
Link to NCBI Protein BLAST