Transcript Information: R_Transcript_288546.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.15617555937214
Replicate 20
Replicate 30.148895950251


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_288546.p1 GENE.R_Transcript_288546~~R_Transcript_288546.p1 ORF type:3prime_partial len:147 (-),score=17.89,UBN2_3|PF14244.2|2.5e-27 R_Transcript_288546:1-438(-)
ATGTCTACTGCTACTATTGATCCAGCACATCCAATGTATCTTCACCCAAGTGACAGTCCTGGTATGGTTCTCGTATCAAAGGTTTTTGATGGTTCTGCTTTTAGTTCTTGGAAGAAGTCTATCTCAATTGCAATTTCTGCTAAAAATAAGTCTGGTTTTATTGATGGTTCATGTTCTTGCCCTGATCTTGATGATCCTCTATATAAAACATGGATTCGATGTGATAATATGGTGACTTCTTGGCTGTTAAATGCACTCTCTAAAAACATTGCTGAATCTGTATTGTACTGTAATTCTGCACATGCTCTTTCGACGTACGCCATTGGGGGGGGAGCTGGAGATTTCCAGAGTAAAGTAGTAGTAAACCAATCAAAAGTCGCAGATTCAACGGAAACCCGCTACATTTTATACCAGGAAAGGATATGGGTGCTGTATTCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_288546.p1 GENE.R_Transcript_288546~~R_Transcript_288546.p1 ORF type:3prime_partial len:147 (-),score=17.89,UBN2_3|PF14244.2|2.5e-27 R_Transcript_288546:1-438(-)
MSTATIDPAHPMYLHPSDSPGMVLVSKVFDGSAFSSWKKSISIAISAKNKSGFIDGSCSCPDLDDPLYKTWIRCDNMVTSWLLNALSKNIAESVLYCNSAHALSTYAIGGGAGDFQSKVVVNQSKVADSTETRYILYQERIWVLYS

Click here to download the sequence:
Link to NCBI Protein BLAST