Transcript Information: R_Transcript_28866.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value2E-32
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6753925513993
Replicate 21.0143140297728
Replicate 31.3279268171683
Condition 2: 8 Hour
Replicate 10.70973521586218
Replicate 20.7561650864169
Replicate 31.2276451627315
Condition 3: 24 Hour
Replicate 12.2181456258651
Replicate 21.8113014547817
Replicate 32.9606557064402


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_28866.p1 GENE.R_Transcript_28866~~R_Transcript_28866.p1 ORF type:internal len:207 (+),score=18.94,PIF1|PF05970.10|7.5e-26,Herpes_Helicase|PF02689.10|1.1e-05,UvrD_C_2|PF13538.2|1.7e-05 R_Transcript_28866:2-619(+)
CTGGTGTACCCTGATCTTCCTCAGCTTGCAGCCCATCCGCATGCATTCAGCTCACGTGCAACACTAACTCCAACAAATGATGAGGTTGATTGCATTAATAAATTAGTGATTGACAATTTCCCGGGTGAAGCATGCACTTACAAAAGCTATGACATCACTCTAGACGATGATTGTATTGCTCATCCAGTAGAGTTCTTGAATACACTATGTCCAGGAGGAATGAGTCCACACAACTTGACGTTAAAATTGAACTGCCCAGTCATCCTACTGCGCAATCTCAATCCATCAGTTGGACTTTGCAATGGAACCAGGCTCATAGTCAGAGGTTTTAAGCCTAATCTGGTTTTGTGTGAGATAGCAACAGGATATCGTTCTGGTGAGTACATCTTCATTCCACGAATTAGTCTAGCACCATCAAGCTCCATCACCTATCCATATAGATTTGAAAGACGGCAGTTTCCAATCAAACTTTGCTTCGCGATGACAATCAACAAGTCTCAGGGGCAAACACTCAGTAATGTTGCTGTGTACCTTCGAAAGCCGTGTTTTTCACATGGCCAGCTCTATGTTGCGCTGTCTAGAGCAAAGAAAGCAAGTTGTGTCAAAGTCTTTATTGAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_28866.p1 GENE.R_Transcript_28866~~R_Transcript_28866.p1 ORF type:internal len:207 (+),score=18.94,PIF1|PF05970.10|7.5e-26,Herpes_Helicase|PF02689.10|1.1e-05,UvrD_C_2|PF13538.2|1.7e-05 R_Transcript_28866:2-619(+)
LVYPDLPQLAAHPHAFSSRATLTPTNDEVDCINKLVIDNFPGEACTYKSYDITLDDDCIAHPVEFLNTLCPGGMSPHNLTLKLNCPVILLRNLNPSVGLCNGTRLIVRGFKPNLVLCEIATGYRSGEYIFIPRISLAPSSSITYPYRFERRQFPIKLCFAMTINKSQGQTLSNVAVYLRKPCFSHGQLYVALSRAKKASCVKVFID

Click here to download the sequence:
Link to NCBI Protein BLAST