Transcript Information: R_Transcript_289364.p1


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeOrtholog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value1E-43
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.1364960123712
Replicate 21.7365361246562
Replicate 35.6836266216017
Condition 2: 8 Hour
Replicate 14.2343976976439
Replicate 24.5394271406918
Replicate 37.2333485930865
Condition 3: 24 Hour
Replicate 18.6307545968812
Replicate 26.1356735259501
Replicate 36.7473375350586


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_289364.p1 GENE.R_Transcript_289364~~R_Transcript_289364.p1 ORF type:5prime_partial len:133 (-),score=36.31,Syntaxin_2|PF14523.2|1.7e-20 R_Transcript_289364:106-504(-)
GGAGGGGCAAAAGAGAAGAAGAAGATGAGCTTCCAAGATCTGGAAGCAGGAGGGAGAAGGCCATTGGCATCAAGGAGGGACTTGATCAATGCAAAGCAAGACCCAACTCAGGCTGTAGCTTCTGGTATTTTCCAGATCAACACTGCTGTCTCTACTTTTCAGCGCCTCGTTAATACCCTTGGTACCCCTAAGGATACTCCTGACCTTCGTCAGAAGCTCCACAAGACCAGGTTGCACATTGGGCAATTAGTGAAGGACACATCAGCTAAACTCAAGCAAGCAAGTGACTCTGATCATGGTACTAATGTCAGTGTAAGTTTTTTTCTGAAAACTCTGGTTATTAGAAACTCTGCTTTTGCCAAGTGGAAGAGAGCAGCTTTCTCATGTTGTTTGGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_289364.p1 GENE.R_Transcript_289364~~R_Transcript_289364.p1 ORF type:5prime_partial len:133 (-),score=36.31,Syntaxin_2|PF14523.2|1.7e-20 R_Transcript_289364:106-504(-)
GGAKEKKKMSFQDLEAGGRRPLASRRDLINAKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPDLRQKLHKTRLHIGQLVKDTSAKLKQASDSDHGTNVSVSFFLKTLVIRNSAFAKWKRAAFSCCLE*

Click here to download the sequence:
Link to NCBI Protein BLAST