Transcript Information: R_Transcript_28961.p1


Annotated TAIR IDAT2G43880.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:18173034-18174482 | Forward length=394
E-Value1.3E-150
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.5822698072004
Replicate 25.7457906510074
Replicate 37.323125829972
Condition 2: 8 Hour
Replicate 113.90246040483
Replicate 215.498207107318
Replicate 319.451470204456
Condition 3: 24 Hour
Replicate 119.493585676721
Replicate 223.465441684093
Replicate 313.099035541519


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_28961.p1 GENE.R_Transcript_28961~~R_Transcript_28961.p1 ORF type:complete len:391 (+),score=3.77,Glyco_hydro_28|PF00295.13|7.9e-85,Pectate_lyase_3|PF12708.3|4.2e-09,Pectate_lyase_3|PF12708.3|1.4e+03,Beta_helix|PF13229.2|7.5e-06 R_Transcript_28961:76-1248(+)
ATGACTAATAAGGCTCTTCACATTAAGCTATTATTATGTGCATTTGTGTTACTTTTCTTGGCAAAGGCAAATGCAGCCTCCTATACAGTGGTAAATTTCGGGGGCAGGCCCGATGGCCGGACGGATTCGACCCAAGCATTCAAAAAAGCATGGGCTTGGGCTTGTGGGTCGACCCGGCCTGTCACACTCCGGATTCCTAAAGGATGGTATGTGGTGAGGCCTACTGTCTTTAGTGGGCCATGTAGGAACCGGGTTACTATTTCGAGTCAGGGTACAATTTTGGCCCCACCGAATTACAGAGTTCTAGCCCGGTCCAATGTGTGGTTGATGTTTTATAGGGTCAATGGACTTACCTTGAATGGTGGAACGTTTGATGCTAGGGGTTCAAGTTTTTGGTCTTGTCGACGCCATTATGGCTATTGCTATAGAGGGGCACAGTCAGTATCATTCATGGCGTGCAGCAACTTAGTGGTGAACAGAGTAACATCAATGAACAGCCAGAAGACACACATAGCGGTGATGGGGTGTAATAACGCAGTGTTCAAGTATTTGTATGTGAGGGCCCCAAGTGGAAGCCCTAACACCGACGGCATGAACATTCAATCCTCCACCGGCGTTACTATTTACGGCAGCGTCTTTAAGACCGGCGACGACTGTATCGCCCTCAGTTCCGGCTCCAAGAACGTTTTGATCCAGCGTGTTGCTTGCGGCCCTGGCCATGGTATTAGTATTGGTAGCTTGGGCAACAGCCGATACGAAGATGGAGTCCAAAATGTAACAGTGACAGGAGTAGTGTTCACAAAGACCACGAATGGAGTACGAATAAAGTCATGGGCCAGGCCCAGCAACGGTTTCGTCCATGGAGTCACCTTCCGCAACCTGGTCATGAGGAATGTTTATAATCCCATCATTATTGACCAGAAATATTGCCCTAACAACCAATGTCCTCGTCAGGCATCAGGAGTGAAAATAAGTAAAGTCAAGTATTTGAAAGTAAGAGGAACATCAGCATCTAAAGTAGCAATGACTTTCGAATGTAGTCCAAGCCATCCATGCCAAGGAATAACATTGCAAGATATCAACCTTACATTTAAGCGTGGTGCAGCCACATCTTACTGCAGAAATATTCGGGGAAGTACTCGAGGCACTGTTATCCCTCGAAGTTGTTTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_28961.p1 GENE.R_Transcript_28961~~R_Transcript_28961.p1 ORF type:complete len:391 (+),score=3.77,Glyco_hydro_28|PF00295.13|7.9e-85,Pectate_lyase_3|PF12708.3|4.2e-09,Pectate_lyase_3|PF12708.3|1.4e+03,Beta_helix|PF13229.2|7.5e-06 R_Transcript_28961:76-1248(+)
MTNKALHIKLLLCAFVLLFLAKANAASYTVVNFGGRPDGRTDSTQAFKKAWAWACGSTRPVTLRIPKGWYVVRPTVFSGPCRNRVTISSQGTILAPPNYRVLARSNVWLMFYRVNGLTLNGGTFDARGSSFWSCRRHYGYCYRGAQSVSFMACSNLVVNRVTSMNSQKTHIAVMGCNNAVFKYLYVRAPSGSPNTDGMNIQSSTGVTIYGSVFKTGDDCIALSSGSKNVLIQRVACGPGHGISIGSLGNSRYEDGVQNVTVTGVVFTKTTNGVRIKSWARPSNGFVHGVTFRNLVMRNVYNPIIIDQKYCPNNQCPRQASGVKISKVKYLKVRGTSASKVAMTFECSPSHPCQGITLQDINLTFKRGAATSYCRNIRGSTRGTVIPRSCL*

Click here to download the sequence:
Link to NCBI Protein BLAST